FC920628
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: PMD1_SCHPO (Leptomycin B resistance protein pmd1 OS=Schizosaccharomyces pombe GN=pmd1 PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19 Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 274 A + +I+LLDEATSALD++SE VQ+ALD A +TTIV+AHRLSTIRNA I V++ GK+ E GSH+ LL N G YAR+++ Q+ + Sbjct: 581 AVISDPKILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKIVEQGSHNELLDLN--GAYARLVEAQKLS 669 HSP 2 Score: 85.1149 bits (209), Expect = 1.739e-16 Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLK 223 A +R +I+LLDEATSALD+ SE+ VQEAL+ A G+TT+ +AHRLS+I++A I V D G +AE G+H+ L+K Sbjct: 1272 ALIRNPKILLLDEATSALDSHSEKVVQEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAEAGTHAELVK 1345
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBVY (Lipid A export ATP-binding/permease protein msbA OS=Vibrio vulnificus (strain YJ016) GN=msbA PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19 Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R A +++LDEATSALD ESER++Q ALD KT +V+AHRLSTI A I VIDDG V E GSHS L++ DG YA++ ++Q Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQSALDELQKNKTVLVIAHRLSTIEKADQILVIDDGAVVERGSHSELIEK--DGAYAQLHRIQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR1_RAT (Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19 Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A VR +I+LLDEATSALD ESE VQ ALD+A G+TTIV+AHRLST+RNA VIA D G + E G+H L+K G Y +++ Q Sbjct: 543 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMKEK--GIYFKLVMTQ 628 HSP 2 Score: 94.3597 bits (233), Expect = 2.866e-19 Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259 A VR+ I+LLDEATSALD ESE+ VQEALD+A G+T +V+AHRLSTI+NA +I VI +G+V E G+H LL G Y M+Q Sbjct: 1188 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCVVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLLAQK--GIYFSMVQ 1271
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_RALEJ (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia eutropha (strain JMP134) GN=msbA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19 Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTH 277 A + A I++LDEATSALD+ESER VQ AL+ G+TT+V+AHRLSTI NA I V+D G+VAE G+H LL N G YA + ++Q TH Sbjct: 501 AIYKDAPILILDEATSALDSESERQVQAALEALMVGRTTLVIAHRLSTIENADRIVVLDHGRVAEHGTHEELLAAN--GLYAGLHRIQFATH 590
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPL (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Lens) GN=msbA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19 Identity = 45/90 (50.00%), Postives = 69/90 (76.67%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 271 A ++ A I++LDEATSALD+ESE +Q AL++ +G+TT+++AHRLSTI++AH I V+ G++ E GSH LL + DG YA++ ++Q+F Sbjct: 492 AILKDAPILILDEATSALDSESEHYIQAALEQVMNGRTTLIIAHRLSTIKHAHKIIVMQHGRIVEQGSHQELL--DMDGHYAQLYKVQQF 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPH (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=msbA PE=3 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19 Identity = 45/90 (50.00%), Postives = 68/90 (75.56%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 271 A ++ A I++LDEATSALD+ESE +Q AL++ G+TT+++AHRLSTI++AH I V+ G++ E GSH LL + DG YA++ ++Q+F Sbjct: 492 AILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGSHQELL--DMDGHYAQLYKVQQF 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPA (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Paris) GN=msbA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19 Identity = 45/90 (50.00%), Postives = 68/90 (75.56%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 271 A ++ A I++LDEATSALD+ESE +Q AL++ G+TT+++AHRLSTI++AH I V+ G++ E GSH LL + DG YA++ ++Q+F Sbjct: 492 AILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQGSHQELL--DMDGHYAQLYKVQQF 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19 Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R +I+LLDEATSALDAESE+ VQ+ALD +TTIV+AHRLSTIRN I V+ DG+V E GSHS L+ D YA ++ Q Sbjct: 524 AVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGD--YATLVNCQ 609 HSP 2 Score: 91.2781 bits (225), Expect = 2.426e-18 Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ ++LLDEATSALD +E+ VQEALD+ G+TTI+VAHRLSTIR A I V+ GKV E GSH L+ + DG Y ++ LQ Sbjct: 1158 AVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKVVEKGSHRELVSKS-DGFYKKLTSLQ 1244
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEF5 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msbA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19 Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253 A ++ A +++LDEATSALD ESER +Q ALD+ G+TT+V+AHRLSTI A +I V+D G++ E GSH+ LL N G Y+R+ Sbjct: 506 ALLKNAPLLILDEATSALDTESERHIQAALDKVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGSHAQLLAQN--GYYSRL 587
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_CHRSD (Lipid A export ATP-binding/permease protein msbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msbA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19 Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A + A +++LDEATSALD ESER +Q+AL+R C G+TT V+AHRLSTI A I V++ G++ E G+H LL DG YA + QLQ Sbjct: 489 AIFKDAPLLVLDEATSALDTESERYIQQALERVCRGRTTFVIAHRLSTIERADRILVMEQGEIIESGTHGELLAQ--DGAYAALHQLQ 574 The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 263
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bpback to top |