FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BORPE (Lipid A export ATP-binding/permease protein msbA OS=Bordetella pertussis GN=msbA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A +++LDEATSALD ESER VQ +L+R   G+TT+V+AHRLST++NA  I V+D GK+ E G HS LL  N  G YA +  +Q
Sbjct:  534 ALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAAN--GLYASLYNMQ 619          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BORPA (Lipid A export ATP-binding/permease protein msbA OS=Bordetella parapertussis GN=msbA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A +++LDEATSALD ESER VQ +L+R   G+TT+V+AHRLST++NA  I V+D GK+ E G HS LL  N  G YA +  +Q
Sbjct:  534 ALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAAN--GLYASLYNMQ 619          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BORBR (Lipid A export ATP-binding/permease protein msbA OS=Bordetella bronchiseptica GN=msbA PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A +++LDEATSALD ESER VQ +L+R   G+TT+V+AHRLST++NA  I V+D GK+ E G HS LL  N  G YA +  +Q
Sbjct:  534 ALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAAN--GLYASLYNMQ 619          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSESM (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. tomato GN=msbA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A ++ A +++LDEATSALD ESER +Q ALD    G+TT+V+AHRLSTI  A +I V+D GK+ E G+H+ LL  N  G YAR+
Sbjct:  505 ALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGKIVERGTHTELLAQN--GYYARL 586          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_XENTR (ATP-binding cassette sub-family B member 8, mitochondrial OS=Xenopus tropicalis GN=abcb8 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++  +I++LDEATSALD ESER+VQ ALDRA SG+T +V+AHRLSTI  A  I V+  G+VAE G+H  LL+    G YA +I+ Q
Sbjct:  595 ALLKDPKILILDEATSALDTESERAVQVALDRARSGRTVLVIAHRLSTISEADFIVVLSKGQVAEFGTHQDLLRRG--GLYADLIRRQ 680          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEAE (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas aeruginosa GN=msbA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.422e-18
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A ++ A +++LDEATSALD ESER +Q ALD    G+TT+V+AHRLSTI  A +I V+D G++ E GSH+ LL  N  G YAR+
Sbjct:  508 ALLKDAPLLILDEATSALDTESERHIQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGQIVERGSHAELLAQN--GHYARL 589          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPF (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf0-1) GN=msbA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-18
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A ++ A +++LDEATSALD ESER +Q ALD+   G+TT+V+AHRLSTI  A +I V+D G++ E G+H  LL  N  G YAR+
Sbjct:  506 ALLKNAPLLILDEATSALDTESERHIQAALDQVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGTHDDLLAQN--GYYARL 587          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_HAHCH (Lipid A export ATP-binding/permease protein msbA OS=Hahella chejuensis (strain KCTC 2396) GN=msbA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-18
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ + I++LDEATSALD  +ER++Q AL+    G+TT+VVAHRLSTI NA  I V+D G++ E+GSH  L++   DG YA + +LQ
Sbjct:  494 ALLKDSPILILDEATSALDTHAERNIQSALETLMKGRTTLVVAHRLSTIENADKIVVMDQGRIVEVGSHRELIEK--DGAYAALHKLQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB28B_ARATH (ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-18
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            + ++ A I++LDEATSALDA SER VQ AL+R    +TT+V+AHRLST+++A+ IAV  DGK+ ELG+HS L+     G YA ++  QR
Sbjct:  624 SLLKNAPILILDEATSALDAVSERLVQSALNRLMKDRTTLVIAHRLSTVQSANQIAVCSDGKIIELGTHSELVAQK--GSYASLVGTQR 710          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_RALME (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=msbA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD+ESER VQ AL+    G+TT+V+AHRLSTI NA  I V++ G+VAE GSH+ L+  N  G YA + ++Q
Sbjct:  504 AIYKDAPILILDEATSALDSESERQVQAALESLMVGRTTLVIAHRLSTIENADRIVVLEQGRVAEQGSHAELIGKN--GLYAGLHRIQ 589          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MSBA_BORPE8.339e-1953.41Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORPA8.339e-1953.41Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORBR8.339e-1953.41Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSESM1.089e-1854.76Lipid A export ATP-binding/permease protein msbA O... [more]
ABCB8_XENTR1.089e-1855.68ATP-binding cassette sub-family B member 8, mitoch... [more]
MSBA_PSEAE1.422e-1854.76Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEPF1.858e-1853.57Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_HAHCH1.858e-1851.14Lipid A export ATP-binding/permease protein msbA O... [more]
AB28B_ARATH1.858e-1852.81ABC transporter B family member 28 OS=Arabidopsis ... [more]
MSBA_RALME2.426e-1854.55Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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