FC920628
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BORPE (Lipid A export ATP-binding/permease protein msbA OS=Bordetella pertussis GN=msbA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19 Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ A +++LDEATSALD ESER VQ +L+R G+TT+V+AHRLST++NA I V+D GK+ E G HS LL N G YA + +Q Sbjct: 534 ALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAAN--GLYASLYNMQ 619
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BORPA (Lipid A export ATP-binding/permease protein msbA OS=Bordetella parapertussis GN=msbA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19 Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ A +++LDEATSALD ESER VQ +L+R G+TT+V+AHRLST++NA I V+D GK+ E G HS LL N G YA + +Q Sbjct: 534 ALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAAN--GLYASLYNMQ 619
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BORBR (Lipid A export ATP-binding/permease protein msbA OS=Bordetella bronchiseptica GN=msbA PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19 Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ A +++LDEATSALD ESER VQ +L+R G+TT+V+AHRLST++NA I V+D GK+ E G HS LL N G YA + +Q Sbjct: 534 ALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAAN--GLYASLYNMQ 619
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSESM (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. tomato GN=msbA PE=3 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18 Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253 A ++ A +++LDEATSALD ESER +Q ALD G+TT+V+AHRLSTI A +I V+D GK+ E G+H+ LL N G YAR+ Sbjct: 505 ALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGKIVERGTHTELLAQN--GYYARL 586
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB8_XENTR (ATP-binding cassette sub-family B member 8, mitochondrial OS=Xenopus tropicalis GN=abcb8 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18 Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ +I++LDEATSALD ESER+VQ ALDRA SG+T +V+AHRLSTI A I V+ G+VAE G+H LL+ G YA +I+ Q Sbjct: 595 ALLKDPKILILDEATSALDTESERAVQVALDRARSGRTVLVIAHRLSTISEADFIVVLSKGQVAEFGTHQDLLRRG--GLYADLIRRQ 680
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEAE (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas aeruginosa GN=msbA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.422e-18 Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253 A ++ A +++LDEATSALD ESER +Q ALD G+TT+V+AHRLSTI A +I V+D G++ E GSH+ LL N G YAR+ Sbjct: 508 ALLKDAPLLILDEATSALDTESERHIQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGQIVERGSHAELLAQN--GHYARL 589
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPF (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf0-1) GN=msbA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-18 Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253 A ++ A +++LDEATSALD ESER +Q ALD+ G+TT+V+AHRLSTI A +I V+D G++ E G+H LL N G YAR+ Sbjct: 506 ALLKNAPLLILDEATSALDTESERHIQAALDQVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVERGTHDDLLAQN--GYYARL 587
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_HAHCH (Lipid A export ATP-binding/permease protein msbA OS=Hahella chejuensis (strain KCTC 2396) GN=msbA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-18 Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ + I++LDEATSALD +ER++Q AL+ G+TT+VVAHRLSTI NA I V+D G++ E+GSH L++ DG YA + +LQ Sbjct: 494 ALLKDSPILILDEATSALDTHAERNIQSALETLMKGRTTLVVAHRLSTIENADKIVVMDQGRIVEVGSHRELIEK--DGAYAALHKLQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB28B_ARATH (ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.858e-18 Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268 + ++ A I++LDEATSALDA SER VQ AL+R +TT+V+AHRLST+++A+ IAV DGK+ ELG+HS L+ G YA ++ QR Sbjct: 624 SLLKNAPILILDEATSALDAVSERLVQSALNRLMKDRTTLVIAHRLSTVQSANQIAVCSDGKIIELGTHSELVAQK--GSYASLVGTQR 710
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_RALME (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=msbA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18 Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A + A I++LDEATSALD+ESER VQ AL+ G+TT+V+AHRLSTI NA I V++ G+VAE GSH+ L+ N G YA + ++Q Sbjct: 504 AIYKDAPILILDEATSALDSESERQVQAALESLMVGRTTLVIAHRLSTIENADRIVVLEQGRVAEQGSHAELIGKN--GLYAGLHRIQ 589 The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 263
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bpback to top |