FC920628
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PHOPR (Lipid A export ATP-binding/permease protein msbA OS=Photobacterium profundum GN=msbA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18 Identity = 44/88 (50.00%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R A +++LDEATSALD ESER++Q AL+ +T +V+AHRLSTI A I V+DDG++ E G+H L+K+ DG YA++ ++Q Sbjct: 497 ALLRNAPVLILDEATSALDTESERAIQSALEELQKDRTVLVIAHRLSTIEGADQILVVDDGEIIERGTHGELIKH--DGAYAQLHRIQ 582
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BORA1 (Lipid A export ATP-binding/permease protein msbA OS=Bordetella avium (strain 197N) GN=msbA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18 Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ A I++LDEATSALD ESER VQ +LDR G+TT+V+AHRLST++NA I V+D G++ E G+H+ LL G YA + +Q Sbjct: 502 ALIKNAPILILDEATSALDNESERQVQSSLDRLMRGRTTLVIAHRLSTVQNADRIIVLDAGRIVEHGAHTELLA--AGGLYATLYNMQ 587
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB4_DICDI (ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18 Identity = 44/88 (50.00%), Postives = 65/88 (73.86%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ +I++LDEATSALD++SE VQ ALD G+TT+V+AHRLST++NA +I V+ GK+AE G+H+ L+ N G Y +++Q Q Sbjct: 676 AILKNPQIIILDEATSALDSQSELLVQTALDNLMKGRTTLVIAHRLSTVQNADLIGVLSHGKIAEFGNHNELM--NHKGLYYKLVQRQ 761
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB1_DICDI (ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18 Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ I+LLDEATSALDAESE V++A+D +T IV+AHRLST+ NA+ + VI+ GK+ E+G+H LL NN DG Y +++ Q Sbjct: 818 AMIQNPMILLLDEATSALDAESEYLVKQAIDEIMKDRTVIVIAHRLSTVINANTVVVINQGKIEEMGTHKELL-NNTDGIYHNLVKRQ 904
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEU2 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msbA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.169e-18 Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253 A ++ A +++LDEATSALD ESER +Q ALD G+TT+V+AHRLSTI A +I V+D G++ E G+H+ LL N G YAR+ Sbjct: 505 ALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADLILVMDAGQIVERGTHTELLAQN--GYYARL 586
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSE14 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msbA PE=3 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 3.169e-18 Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253 A ++ A +++LDEATSALD ESER +Q ALD G+TT+V+AHRLSTI A +I V+D G++ E G+H+ LL N G YAR+ Sbjct: 505 ALLKNAPLLILDEATSALDTESERHIQAALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGQIVERGTHTELLAQN--GYYARL 586
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB27B_ARATH (ABC transporter B family member 27 OS=Arabidopsis thaliana GN=ABCB27 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.169e-18 Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQV 286 A + ++LLDEATSALDAESE VQ+A+D +G+T +V+AHRLST++ A +AVI DG+VAE G+H LL N G Y +++ Q + S V Sbjct: 549 ALLTNPSVLLLDEATSALDAESEYLVQDAMDSLMAGRTVLVIAHRLSTVKTADCVAVISDGEVAEKGTHDELLSLN--GIYTNLVKRQLQSSSSV 641
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ALHEH (Lipid A export ATP-binding/permease protein msbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=msbA PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 4.139e-18 Identity = 46/88 (52.27%), Postives = 66/88 (75.00%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ A I++LDEATSALD+ESE+ +QEAL++ G+TT+V+AHRLSTI +A I V+D G+V E G+H LL +N G YA + ++Q Sbjct: 499 ALLKDAPILILDEATSALDSESEKRIQEALEKLMRGRTTLVIAHRLSTIEDADRIVVLDAGRVVETGTHRELLDHN--GHYASLHRVQ 584
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURS3 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia sp. (strain 383) GN=msbA PE=3 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18 Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A + A I++LDEATSALD+ESER VQ AL+R G+TT+V+AHRLSTI A I V++ GK+ E GSH LL++ G YA + ++Q Sbjct: 502 AIYKDAPILILDEATSALDSESERHVQAALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGSHDELLRHG--GLYAHLHRIQ 587
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURCA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia cenocepacia (strain AU 1054) GN=msbA PE=3 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18 Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A + A I++LDEATSALD+ESER VQ AL+R G+TT+V+AHRLSTI A I V++ GK+ E GSH LL++ G YA + ++Q Sbjct: 502 AIYKDAPILILDEATSALDSESERHVQAALERLMEGRTTLVIAHRLSTIERADRILVLEAGKIVEEGSHDELLRHG--GLYAHLHRIQ 587 The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 263
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bpback to top |