FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBB_RAT (Bile salt export pump OS=Rattus norvegicus GN=Abcb11 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256
            A VR  +I+LLDEATSALD ESE++VQ ALD+A  G+T IV+AHRLSTI+N+ +IAV+  G V E G+H  L+     G Y +++
Sbjct: 1232 AIVRDPKILLLDEATSALDTESEKTVQTALDKAREGRTCIVIAHRLSTIQNSDIIAVVSQGVVIEKGTHEKLMAQK--GAYYKLV 1314          

HSP 2 Score: 76.2554 bits (186), Expect = 8.077e-14
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R  +I+LLD ATSALD ESE  VQEAL++   G T I VAHRLST+R A VI   + G   E G+H  LL+    G Y  ++ LQ
Sbjct:  572 ALIRNPKILLLDMATSALDNESEARVQEALNKIQHGHTIISVAHRLSTVRAADVIIGFEHGVAVERGTHEELLERK--GVYFMLVTLQ 657          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB2_DICDI (ABC transporter B family member 2 OS=Dictyostelium discoideum GN=abcB2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R  +++LLDEATSALD  SE+ VQ ALD    G+T+IV+AHRLST+ +A +I V+ +GKV ELG+H  LL  N  G YA ++  Q
Sbjct: 1311 AIIRNPKVLLLDEATSALDTVSEKVVQVALDNVSKGRTSIVIAHRLSTVIDADLIVVVKEGKVVELGTHETLLAEN--GFYAELVSRQ 1396          

HSP 2 Score: 82.0333 bits (201), Expect = 1.472e-15
Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A ++  +I+LLDEATSALD+++E  VQ+++++   G+TTIV+AHRLSTI++A  IAV+  G + E+G+H  L   N  G Y +++  Q+
Sbjct:  626 AMIKDPKILLLDEATSALDSQNELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVVKGGAIVEIGTHPELYALN--GVYTQLVNRQQ 712          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBPA (Lipid A export ATP-binding/permease protein msbA OS=Vibrio parahaemolyticus GN=msbA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESER++Q ALD     KT +V+AHRLSTI  A  I V+DDG + E G+H+ L+  N  G YA++ ++Q
Sbjct:  494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKDKTVLVIAHRLSTIEKADEILVVDDGAIIERGNHADLIAKN--GAYAQLHRIQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBB_HUMAN (Bile salt export pump OS=Homo sapiens GN=ABCB11 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256
            A VR  +I+LLDEATSALD ESE++VQ ALD+A  G+T IV+AHRLSTI+NA +IAV+  G V E G+H  L+     G Y +++
Sbjct: 1232 AIVRDPKILLLDEATSALDTESEKTVQVALDKAREGRTCIVIAHRLSTIQNADIIAVMAQGVVIEKGTHEELMAQK--GAYYKLV 1314          

HSP 2 Score: 73.1738 bits (178), Expect = 6.838e-13
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R  +I+LLD ATSALD ESE  VQE L +   G T I VAHRLST+R A  I   + G   E G+H  LL+    G Y  ++ LQ
Sbjct:  572 ALIRNPKILLLDMATSALDNESEAMVQEVLSKIQHGHTIISVAHRLSTVRAADTIIGFEHGTAVERGTHEELLERK--GVYFTLVTLQ 657          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBCH (Lipid A export ATP-binding/permease protein msbA OS=Vibrio cholerae GN=msbA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESER++Q ALD     KT +V+AHRLSTI  A  I V+D+G++ E G H+ LL    DG YA++ ++Q
Sbjct:  494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ--DGAYAQLHRIQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_AZOSE (Lipid A export ATP-binding/permease protein msbA OS=Azoarcus sp. (strain EbN1) GN=msbA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEATSALD ESER +Q AL R    +TT+V+AHRLSTI  A VI V+D G++ E GSH+ LL     G YAR+  +Q
Sbjct:  505 ALLKNAPILILDEATSALDTESERHIQAALHRVMQARTTLVIAHRLSTIEQADVIMVMDHGRIVERGSHAELLA--AGGHYARLHAMQ 590          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBB_RABIT (Bile salt export pump OS=Oryctolagus cuniculus GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256
            A VR  +I+LLDEATSALD ESE++VQ ALD+A  G+T IV+AHRLSTI+N+ +IAV+  G V E G+H  L+     G Y +++
Sbjct: 1232 AIVRDPKILLLDEATSALDTESEKTVQVALDKAREGRTCIVIAHRLSTIQNSDIIAVMSQGMVIEKGTHEELMVQK--GAYYKLV 1314          

HSP 2 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R  +I+LLD ATSALD ESE  VQEAL +   G T + VAHR +TIR A VI   + G   E G+   LL+    G Y  ++ LQ
Sbjct:  572 ALIRNPKILLLDMATSALDNESEAMVQEALSKTQHGHTIVSVAHRPATIRTADVIIGCEHGAAVERGTEEELLERK--GVYFALVTLQ 657          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB5_HUMAN (ATP-binding cassette sub-family B member 5 OS=Homo sapiens GN=ABCB5 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A VR  +I++LDEATSALD+ES+ +VQ AL++A  G+TTIVVAHRLSTIR+A +I  + DG +AE G+H+ L+     G Y  ++  Q
Sbjct:   93 ALVRNPKILILDEATSALDSESKSAVQAALEKASKGRTTIVVAHRLSTIRSADLIVTLKDGMLAEKGAHAELMAKR--GLYYSLVMSQ 178          

HSP 2 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 44/88 (50.00%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++K +I+LLDEATSALD +SE+ VQ ALD+A +G+T +VV HRLS I+NA +I V+ +GK+ E G+H  LL+N     Y +++  Q
Sbjct:  724 ALLQKPKILLLDEATSALDNDSEKVVQHALDKARTGRTCLVVTHRLSAIQNADLIVVLHNGKIKEQGTHQELLRNR--DIYFKLVNAQ 809          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y015_MYCGE (Putative ABC transporter ATP-binding protein MG015 OS=Mycoplasma genitalium GN=MG015 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17
Identity = 43/86 (50.00%), Postives = 63/86 (73.26%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A +R A ++LLDEATS++D  SE+ +QE++ R    KT+ +++HRLS IR+A +I VI+DGKV E+G+H  L+K N  G YAR+ Q
Sbjct:  502 AVIRNAPVLLLDEATSSVDVHSEKLIQESIGRLMKNKTSFIISHRLSIIRDATLIMVINDGKVLEMGNHDQLMKQN--GFYARLKQ 585          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBF1 (Lipid A export ATP-binding/permease protein msbA OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=msbA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17
Identity = 43/88 (48.86%), Postives = 65/88 (73.86%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A +++LDEATSALD ESE+++Q ALD     KT +V+AHRLSTI +A  I V+D+G+V E G+H+ L+ +  DG YA++ ++Q
Sbjct:  494 ALLQNAPVLILDEATSALDTESEKAIQSALDELQKDKTVLVIAHRLSTIEDADQILVVDEGEVVERGNHAELIAH--DGAYAQLHRIQ 579          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
ABCBB_RAT5.405e-1854.12Bile salt export pump OS=Rattus norvegicus GN=Abcb... [more]
ABCB2_DICDI5.405e-1852.27ABC transporter B family member 2 OS=Dictyostelium... [more]
MSBA_VIBPA7.060e-1851.14Lipid A export ATP-binding/permease protein msbA O... [more]
ABCBB_HUMAN7.060e-1855.29Bile salt export pump OS=Homo sapiens GN=ABCB11 PE... [more]
MSBA_VIBCH9.220e-1851.14Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_AZOSE9.220e-1853.41Lipid A export ATP-binding/permease protein msbA O... [more]
ABCBB_RABIT9.220e-1854.12Bile salt export pump OS=Oryctolagus cuniculus GN=... [more]
ABCB5_HUMAN9.220e-1852.27ATP-binding cassette sub-family B member 5 OS=Homo... [more]
Y015_MYCGE1.204e-1750.00Putative ABC transporter ATP-binding protein MG015... [more]
MSBA_VIBF11.204e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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