FC920628
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBB_RAT (Bile salt export pump OS=Rattus norvegicus GN=Abcb11 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18 Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256 A VR +I+LLDEATSALD ESE++VQ ALD+A G+T IV+AHRLSTI+N+ +IAV+ G V E G+H L+ G Y +++ Sbjct: 1232 AIVRDPKILLLDEATSALDTESEKTVQTALDKAREGRTCIVIAHRLSTIQNSDIIAVVSQGVVIEKGTHEKLMAQK--GAYYKLV 1314 HSP 2 Score: 76.2554 bits (186), Expect = 8.077e-14 Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R +I+LLD ATSALD ESE VQEAL++ G T I VAHRLST+R A VI + G E G+H LL+ G Y ++ LQ Sbjct: 572 ALIRNPKILLLDMATSALDNESEARVQEALNKIQHGHTIISVAHRLSTVRAADVIIGFEHGVAVERGTHEELLERK--GVYFMLVTLQ 657
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB2_DICDI (ABC transporter B family member 2 OS=Dictyostelium discoideum GN=abcB2 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18 Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R +++LLDEATSALD SE+ VQ ALD G+T+IV+AHRLST+ +A +I V+ +GKV ELG+H LL N G YA ++ Q Sbjct: 1311 AIIRNPKVLLLDEATSALDTVSEKVVQVALDNVSKGRTSIVIAHRLSTVIDADLIVVVKEGKVVELGTHETLLAEN--GFYAELVSRQ 1396 HSP 2 Score: 82.0333 bits (201), Expect = 1.472e-15 Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268 A ++ +I+LLDEATSALD+++E VQ+++++ G+TTIV+AHRLSTI++A IAV+ G + E+G+H L N G Y +++ Q+ Sbjct: 626 AMIKDPKILLLDEATSALDSQNELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVVKGGAIVEIGTHPELYALN--GVYTQLVNRQQ 712
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBPA (Lipid A export ATP-binding/permease protein msbA OS=Vibrio parahaemolyticus GN=msbA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18 Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R A +++LDEATSALD ESER++Q ALD KT +V+AHRLSTI A I V+DDG + E G+H+ L+ N G YA++ ++Q Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKDKTVLVIAHRLSTIEKADEILVVDDGAIIERGNHADLIAKN--GAYAQLHRIQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBB_HUMAN (Bile salt export pump OS=Homo sapiens GN=ABCB11 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18 Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256 A VR +I+LLDEATSALD ESE++VQ ALD+A G+T IV+AHRLSTI+NA +IAV+ G V E G+H L+ G Y +++ Sbjct: 1232 AIVRDPKILLLDEATSALDTESEKTVQVALDKAREGRTCIVIAHRLSTIQNADIIAVMAQGVVIEKGTHEELMAQK--GAYYKLV 1314 HSP 2 Score: 73.1738 bits (178), Expect = 6.838e-13 Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R +I+LLD ATSALD ESE VQE L + G T I VAHRLST+R A I + G E G+H LL+ G Y ++ LQ Sbjct: 572 ALIRNPKILLLDMATSALDNESEAMVQEVLSKIQHGHTIISVAHRLSTVRAADTIIGFEHGTAVERGTHEELLERK--GVYFTLVTLQ 657
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBCH (Lipid A export ATP-binding/permease protein msbA OS=Vibrio cholerae GN=msbA PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18 Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R A +++LDEATSALD ESER++Q ALD KT +V+AHRLSTI A I V+D+G++ E G H+ LL DG YA++ ++Q Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ--DGAYAQLHRIQ 579
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_AZOSE (Lipid A export ATP-binding/permease protein msbA OS=Azoarcus sp. (strain EbN1) GN=msbA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18 Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ A I++LDEATSALD ESER +Q AL R +TT+V+AHRLSTI A VI V+D G++ E GSH+ LL G YAR+ +Q Sbjct: 505 ALLKNAPILILDEATSALDTESERHIQAALHRVMQARTTLVIAHRLSTIEQADVIMVMDHGRIVERGSHAELLA--AGGHYARLHAMQ 590
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBB_RABIT (Bile salt export pump OS=Oryctolagus cuniculus GN=ABCB11 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18 Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256 A VR +I+LLDEATSALD ESE++VQ ALD+A G+T IV+AHRLSTI+N+ +IAV+ G V E G+H L+ G Y +++ Sbjct: 1232 AIVRDPKILLLDEATSALDTESEKTVQVALDKAREGRTCIVIAHRLSTIQNSDIIAVMSQGMVIEKGTHEELMVQK--GAYYKLV 1314 HSP 2 Score: 70.0922 bits (170), Expect = 5.789e-12 Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R +I+LLD ATSALD ESE VQEAL + G T + VAHR +TIR A VI + G E G+ LL+ G Y ++ LQ Sbjct: 572 ALIRNPKILLLDMATSALDNESEAMVQEALSKTQHGHTIVSVAHRPATIRTADVIIGCEHGAAVERGTEEELLERK--GVYFALVTLQ 657
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCB5_HUMAN (ATP-binding cassette sub-family B member 5 OS=Homo sapiens GN=ABCB5 PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18 Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A VR +I++LDEATSALD+ES+ +VQ AL++A G+TTIVVAHRLSTIR+A +I + DG +AE G+H+ L+ G Y ++ Q Sbjct: 93 ALVRNPKILILDEATSALDSESKSAVQAALEKASKGRTTIVVAHRLSTIRSADLIVTLKDGMLAEKGAHAELMAKR--GLYYSLVMSQ 178 HSP 2 Score: 87.4261 bits (215), Expect = 3.504e-17 Identity = 44/88 (50.00%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++K +I+LLDEATSALD +SE+ VQ ALD+A +G+T +VV HRLS I+NA +I V+ +GK+ E G+H LL+N Y +++ Q Sbjct: 724 ALLQKPKILLLDEATSALDNDSEKVVQHALDKARTGRTCLVVTHRLSAIQNADLIVVLHNGKIKEQGTHQELLRNR--DIYFKLVNAQ 809
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y015_MYCGE (Putative ABC transporter ATP-binding protein MG015 OS=Mycoplasma genitalium GN=MG015 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17 Identity = 43/86 (50.00%), Postives = 63/86 (73.26%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259 A +R A ++LLDEATS++D SE+ +QE++ R KT+ +++HRLS IR+A +I VI+DGKV E+G+H L+K N G YAR+ Q Sbjct: 502 AVIRNAPVLLLDEATSSVDVHSEKLIQESIGRLMKNKTSFIISHRLSIIRDATLIMVINDGKVLEMGNHDQLMKQN--GFYARLKQ 585
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_VIBF1 (Lipid A export ATP-binding/permease protein msbA OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=msbA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17 Identity = 43/88 (48.86%), Postives = 65/88 (73.86%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A ++ A +++LDEATSALD ESE+++Q ALD KT +V+AHRLSTI +A I V+D+G+V E G+H+ L+ + DG YA++ ++Q Sbjct: 494 ALLQNAPVLILDEATSALDTESEKAIQSALDELQKDKTVLVIAHRLSTIEDADQILVVDEGEVVERGNHAELIAH--DGAYAQLHRIQ 579 The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 263
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bpback to top |