FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHEFN (Lipid A export ATP-binding/permease protein msbA OS=Shewanella frigidimarina (strain NCIMB 400) GN=msbA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESE+++Q+ LD     +T+IV+AHRLSTI +A  I VID GK+ E G+HS L+     G YA + Q+Q
Sbjct:  512 AMLRDAPVLILDEATSALDTESEKAIQKGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIVERGNHSELIAQ--AGIYANLYQMQ 597          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPK (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas putida (strain KT2440) GN=msbA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A ++ A +++LDEATSALD ESER +Q ALD    G+TT+V+AHRLSTI  A  I V+D G++ E G+H+ LL  N  G YAR+
Sbjct:  507 ALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLSTIEKADQILVMDQGRLVERGTHTELLAAN--GHYARL 588          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_HAEI8 (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus influenzae (strain 86-028NP) GN=msbA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + +++LDEATSALD ESER++Q ALD     +T IV+AHRLSTI NA  I VID G++ E G+H  LL+ N  G Y ++  +Q
Sbjct:  499 ALLRNSPVLILDEATSALDTESERAIQSALDELKKDRTVIVIAHRLSTIENADEILVIDHGEIRERGNHKALLEQN--GAYKQLYSMQ 584          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SACD2 (Lipid A export ATP-binding/permease protein msbA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msbA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD ESE+ +Q ALD    G+TT+V+AHRLSTI NA  I V+D+G++ E G+H  LL  +  G YA +   Q
Sbjct:  499 ALYKNAPILILDEATSALDNESEKQIQSALDELKQGRTTLVIAHRLSTIENADTILVMDNGRIVEAGNHQTLLDRS--GVYANLYHSQ 584          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_RALSO (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia solanacearum GN=msbA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD+ESER VQ AL+    G+TT+V+AHRLSTI NA  I V++ G++ E G+H  LL  + DG YA + ++Q
Sbjct:  503 AVYKDAPILILDEATSALDSESERQVQAALEALMQGRTTLVIAHRLSTIENADRIVVLEHGQIVEAGTHRELL--DRDGLYAGLHRIQ 588          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ALCBS (Lipid A export ATP-binding/permease protein msbA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=msbA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262
            A ++ A +++LDEATSALD+ESE  +Q+AL++   G+TT+V+AHRLSTI  A  I V+D G++ E GSH  LL+ N  G Y +M ++
Sbjct:  493 ALLKDAPVLILDEATSALDSESEHHIQQALEQVMQGRTTLVIAHRLSTIEKADRIMVLDQGQLIEQGSHQQLLEKN--GLYTQMYRM 577          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBB_MOUSE (Bile salt export pump OS=Mus musculus GN=Abcb11 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256
            A VR  +I+LLDEATSALD ESE++VQ ALD+A  G+T IV+AHRLSTI+N+ +IAV+  G V E G+H  L+  +  G Y +++
Sbjct: 1232 AIVRDPKILLLDEATSALDTESEKTVQLALDKAREGRTCIVIAHRLSTIQNSDIIAVMSQGVVIEKGTHKKLM--DQKGAYYKLV 1314          

HSP 2 Score: 77.411 bits (189), Expect = 3.626e-14
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +RK +I+LLD ATSALD ESE  VQ AL++   G T I VAHRLST+R+A VI   + G   E G+H  LL+    G Y  ++ LQ
Sbjct:  572 ALIRKPKILLLDMATSALDNESEAKVQGALNKIQHGHTIISVAHRLSTVRSADVIIGFEHGTAVERGTHEELLERK--GVYFMLVTLQ 657          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y019_MYCPN (Putative ABC transporter ATP-binding protein MG015 homolog OS=Mycoplasma pneumoniae GN=MPN_019 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 41/84 (48.81%), Postives = 62/84 (73.81%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253
            A +R A ++LLDEATS++D  SE+ +Q+++ R    KT+ +++HRLS IRNA +I VI+DGKV E+G+H  L++ N  G YAR+
Sbjct:  547 AVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMKDKTSFIISHRLSIIRNATLIIVINDGKVLEMGNHEQLMRQN--GFYARL 628          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHESR (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-7) GN=msbA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESE+++Q+ LD     +T++V+AHRLSTI +A  I V+D G++ E G+H  LL+    G YA++ Q+Q
Sbjct:  513 AMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELG--GMYAKLYQMQ 598          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHESM (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-4) GN=msbA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESE+++Q+ LD     +T++V+AHRLSTI +A  I V+D G++ E G+H  LL+    G YA++ Q+Q
Sbjct:  513 AMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELG--GMYAKLYQMQ 598          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MSBA_SHEFN1.204e-1751.14Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEPK1.204e-1753.57Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_HAEI81.204e-1751.14Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SACD21.573e-1751.14Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_RALSO1.573e-1752.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ALCBS1.573e-1749.43Lipid A export ATP-binding/permease protein msbA O... [more]
ABCBB_MOUSE1.573e-1754.12Bile salt export pump OS=Mus musculus GN=Abcb11 PE... [more]
Y019_MYCPN2.683e-1748.81Putative ABC transporter ATP-binding protein MG015... [more]
MSBA_SHESR2.683e-1747.73Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHESM2.683e-1747.73Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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