FC920628
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHEFN (Lipid A export ATP-binding/permease protein msbA OS=Shewanella frigidimarina (strain NCIMB 400) GN=msbA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17 Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R A +++LDEATSALD ESE+++Q+ LD +T+IV+AHRLSTI +A I VID GK+ E G+HS L+ G YA + Q+Q Sbjct: 512 AMLRDAPVLILDEATSALDTESEKAIQKGLDNLRHNRTSIVIAHRLSTIESADEILVIDQGKIVERGNHSELIAQ--AGIYANLYQMQ 597
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEPK (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas putida (strain KT2440) GN=msbA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17 Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253 A ++ A +++LDEATSALD ESER +Q ALD G+TT+V+AHRLSTI A I V+D G++ E G+H+ LL N G YAR+ Sbjct: 507 ALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLSTIEKADQILVMDQGRLVERGTHTELLAAN--GHYARL 588
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_HAEI8 (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus influenzae (strain 86-028NP) GN=msbA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17 Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R + +++LDEATSALD ESER++Q ALD +T IV+AHRLSTI NA I VID G++ E G+H LL+ N G Y ++ +Q Sbjct: 499 ALLRNSPVLILDEATSALDTESERAIQSALDELKKDRTVIVIAHRLSTIENADEILVIDHGEIRERGNHKALLEQN--GAYKQLYSMQ 584
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SACD2 (Lipid A export ATP-binding/permease protein msbA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msbA PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17 Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A + A I++LDEATSALD ESE+ +Q ALD G+TT+V+AHRLSTI NA I V+D+G++ E G+H LL + G YA + Q Sbjct: 499 ALYKNAPILILDEATSALDNESEKQIQSALDELKQGRTTLVIAHRLSTIENADTILVMDNGRIVEAGNHQTLLDRS--GVYANLYHSQ 584
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_RALSO (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia solanacearum GN=msbA PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17 Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A + A I++LDEATSALD+ESER VQ AL+ G+TT+V+AHRLSTI NA I V++ G++ E G+H LL + DG YA + ++Q Sbjct: 503 AVYKDAPILILDEATSALDSESERQVQAALEALMQGRTTLVIAHRLSTIENADRIVVLEHGQIVEAGTHRELL--DRDGLYAGLHRIQ 588
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ALCBS (Lipid A export ATP-binding/permease protein msbA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=msbA PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17 Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262 A ++ A +++LDEATSALD+ESE +Q+AL++ G+TT+V+AHRLSTI A I V+D G++ E GSH LL+ N G Y +M ++ Sbjct: 493 ALLKDAPVLILDEATSALDSESEHHIQQALEQVMQGRTTLVIAHRLSTIEKADRIMVLDQGQLIEQGSHQQLLEKN--GLYTQMYRM 577
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: ABCBB_MOUSE (Bile salt export pump OS=Mus musculus GN=Abcb11 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17 Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 256 A VR +I+LLDEATSALD ESE++VQ ALD+A G+T IV+AHRLSTI+N+ +IAV+ G V E G+H L+ + G Y +++ Sbjct: 1232 AIVRDPKILLLDEATSALDTESEKTVQLALDKAREGRTCIVIAHRLSTIQNSDIIAVMSQGVVIEKGTHKKLM--DQKGAYYKLV 1314 HSP 2 Score: 77.411 bits (189), Expect = 3.626e-14 Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +RK +I+LLD ATSALD ESE VQ AL++ G T I VAHRLST+R+A VI + G E G+H LL+ G Y ++ LQ Sbjct: 572 ALIRKPKILLLDMATSALDNESEAKVQGALNKIQHGHTIISVAHRLSTVRSADVIIGFEHGTAVERGTHEELLERK--GVYFMLVTLQ 657
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: Y019_MYCPN (Putative ABC transporter ATP-binding protein MG015 homolog OS=Mycoplasma pneumoniae GN=MPN_019 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17 Identity = 41/84 (48.81%), Postives = 62/84 (73.81%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 253 A +R A ++LLDEATS++D SE+ +Q+++ R KT+ +++HRLS IRNA +I VI+DGKV E+G+H L++ N G YAR+ Sbjct: 547 AVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMKDKTSFIISHRLSIIRNATLIIVINDGKVLEMGNHEQLMRQN--GFYARL 628
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHESR (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-7) GN=msbA PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17 Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R A +++LDEATSALD ESE+++Q+ LD +T++V+AHRLSTI +A I V+D G++ E G+H LL+ G YA++ Q+Q Sbjct: 513 AMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELG--GMYAKLYQMQ 598
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHESM (Lipid A export ATP-binding/permease protein msbA OS=Shewanella sp. (strain MR-4) GN=msbA PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17 Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = 2 Query: 2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265 A +R A +++LDEATSALD ESE+++Q+ LD +T++V+AHRLSTI +A I V+D G++ E G+H LL+ G YA++ Q+Q Sbjct: 513 AMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELG--GMYAKLYQMQ 598 The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 263
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bpback to top |