FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SHEON (Lipid A export ATP-binding/permease protein msbA OS=Shewanella oneidensis GN=msbA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R A +++LDEATSALD ESE+++Q+ LD     +T++V+AHRLSTI +A  I V+D G++ E G+H  LL+    G YA++ Q+Q
Sbjct:  513 AMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELG--GMYAKLYQMQ 598          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PHOLL (Lipid A export ATP-binding/permease protein msbA OS=Photorhabdus luminescens subsp. laumondii GN=msbA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + +++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI NA  I V++DG + E G H  LL+ N  G Y+++ ++Q
Sbjct:  493 ALLRDSPVLILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIENADEILVVEDGHIVERGDHLSLLERN--GVYSQLHRMQ 578          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_METFK (Lipid A export ATP-binding/permease protein msbA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=msbA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I+LLDEATSALD ESER VQ ALD     +T+IV+AHRLSTI NA  I V++ G++ E GSH  LL    DG YA++ + Q
Sbjct:  496 AILKNAPILLLDEATSALDTESERHVQAALDELMQNRTSIVIAHRLSTIENADRIMVMEQGRIIEGGSHEELLA--LDGHYAKLYRKQ 581          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_ERWCT (Lipid A export ATP-binding/permease protein msbA OS=Erwinia carotovora subsp. atroseptica GN=msbA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T +V+AHRLSTI  A  I V++DG++ E G+H+ LL  N  G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKDRTALVIAHRLSTIEKADEILVVEDGRIIERGNHTALLATN--GAYAQLHRMQ 579          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_PSEHT (Lipid A export ATP-binding/permease protein msbA OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=msbA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEATSALD ESE+ +Q+AL+     KT+IV+AHRLSTI N+  I VID+G V E G H  LL NN  G Y+ + ++Q
Sbjct:  491 AILKDAPILILDEATSALDTESEKLIQQALEALMKDKTSIVIAHRLSTIENSDRIYVIDNGSVIESGDHLSLLANN--GTYSALCKMQ 576          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURTA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=msbA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD+ESER VQ AL+    G+TT+V+AHRLSTI  A  I V++ GK+ E GSH  LL+    G YA + ++Q
Sbjct:  505 AIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGSHRELLEQG--GLYAHLHRIQ 590          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURPS (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei GN=msbA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD+ESER VQ AL+    G+TT+V+AHRLSTI  A  I V++ GK+ E GSH  LL+    G YA + ++Q
Sbjct:  505 AIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGSHRELLEQG--GLYAHLHRIQ 590          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURP1 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei (strain 1710b) GN=msbA PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD+ESER VQ AL+    G+TT+V+AHRLSTI  A  I V++ GK+ E GSH  LL+    G YA + ++Q
Sbjct:  505 AIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGSHRELLEQG--GLYAHLHRIQ 590          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_BURMA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia mallei GN=msbA PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A  + A I++LDEATSALD+ESER VQ AL+    G+TT+V+AHRLSTI  A  I V++ GK+ E GSH  LL+    G YA + ++Q
Sbjct:  505 AIYKDAPILILDEATSALDSESERHVQAALETLMKGRTTLVIAHRLSTIERADRILVLEGGKIVESGSHRELLEQG--GLYAHLHRIQ 590          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MSBA_SALTY (Lipid A export ATP-binding/permease protein msbA OS=Salmonella typhimurium GN=msbA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + I++LDEATSALD ESER++Q ALD     +T++V+AHRLSTI  A  I V++DG + E G+HS LL  +  G YA++ ++Q
Sbjct:  494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH--GVYAQLHKMQ 579          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
MSBA_SHEON2.683e-1747.73Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PHOLL2.683e-1748.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_METFK2.683e-1754.55Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ERWCT2.683e-1750.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_PSEHT3.504e-1752.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURTA3.504e-1752.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURPS3.504e-1752.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURP13.504e-1752.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURMA3.504e-1752.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SALTY4.576e-1750.00Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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