FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_TREPS (Seryl-tRNA synthetase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=serS PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.666e-58
Identity = 108/229 (47.16%), Postives = 146/229 (63.76%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGL--GRYGEIS 714
            K  G P  F+F  +DH +L + LDI DF+A  +VSG KFYYLK E V+LE  LI + L  + +RGF P  TP+I R  +V   GF PRG+ + +Y IEG  +CL+ TAEI +G  H   +L E  LP  YA  SHCF             LYRVHQF+KLEMF +C P +S+  HE L  +EE+++++L + F+ V++   DLGAPAYRK+D+EAWMPG   G +GE++
Sbjct:  123 KRCGVPPCFSFSPRDHVELARLLDIVDFEAGKKVSGIKFYYLKREGVLLEQALIMFGLQFLQERGFVPFLTPDIAREGMVCGLGFNPRGSGSNIYRIEGEHRCLVATAEITLGAYHAGEVLEERSLPRLYAGLSHCFRKEAGAAGQFSRGLYRVHQFTKLEMFAYCTPSDSECLHERLRSLEEEIFTALEIPFRVVEVCAGDLGAPAYRKWDLEAWMPGRQGGSWGEVT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_TREPA (Seryl-tRNA synthetase OS=Treponema pallidum GN=serS PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.666e-58
Identity = 108/229 (47.16%), Postives = 146/229 (63.76%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGL--GRYGEIS 714
            K  G P  F+F  +DH +L + LDI DF+A  +VSG KFYYLK E V+LE  LI + L  + +RGF P  TP+I R  +V   GF PRG+ + +Y IEG  +CL+ TAEI +G  H   +L E  LP  YA  SHCF             LYRVHQF+KLEMF +C P +S+  HE L  +EE+++++L + F+ V++   DLGAPAYRK+D+EAWMPG   G +GE++
Sbjct:  123 KRCGVPPCFSFSPRDHVELARLLDIVDFEAGKKVSGIKFYYLKREGVLLEQALIMFGLQFLQERGFVPFLTPDIAREGMVCGLGFNPRGSGSNIYRIEGEHRCLVATAEITLGAYHAGEVLEERSLPRLYAGLSHCFRKEAGAAGQFSRGLYRVHQFTKLEMFAYCTPSDSECLHERLRSLEEEIFTALEIPFRVVEVCAGDLGAPAYRKWDLEAWMPGRQGGSWGEVT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHOBA (Seryl-tRNA synthetase OS=Rhodopirellula baltica GN=serS PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 9.371e-56
Identity = 105/237 (44.30%), Postives = 152/237 (64.14%), Query Frame = 1
Query:    1 PVGGE-DCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGE 708
            P GGE D + I +        +F   DH QLG+  D+FDF+  A V+GS FY+L+N AV L++ L  + +S +  +GFTP++TP++  +SV++  GF PRG  TQ+YSIE  +  L+ TAEIP+GG+    IL+   LPL+Y   SHCF             LYRVHQF+K+EMF F  P++S + HEE+  +E +++ +L + ++ +D AT DLG PAYRK+D+EAWMPG G  G+
Sbjct:  111 PEGGEHDANEIGRGKTPVPEMDFQPLDHLQLGEKHDLFDFEGGARVAGSGFYFLRNAAVRLDLALQQFAISHLAGKGFTPVSTPDLALTSVLQGTGFNPRGPETQIYSIENTELNLVATAEIPLGGMLSGQILASEELPLRYCGLSHCFRTEAGAAGRASKGLYRVHQFTKVEMFAFTLPDQSTAMHEEMRELECEIFDALEVPYRVIDTATGDLGGPAYRKYDLEAWMPGRGESGD 347          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS1_STRAW (Seryl-tRNA synthetase 1 OS=Streptomyces avermitilis GN=serS1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.980e-49
Identity = 98/241 (40.66%), Postives = 146/241 (60.58%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFN---FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVGGE+  ++ +T G    F    F  KDH +LG+AL   D +  A+VSGS+FYYL     +LE+ L+N  +++  + GF P+ TP +VR   +E  GF  + A+  VY +E  D  L+GT+E+P+   HMD IL    LP++YA FS CF             ++RVHQF K+EMF +  PE++++ H+ L+  E+   + L L F+ +D+A+ DLGA A RKFD EAW+P  G+Y E++
Sbjct:  111 PVGGEEDFVVLETHGTIRDFGAEGFEPKDHLELGEALGAIDVERGAKVSGSRFYYLTGVGALLELALVNAAIAQATEAGFIPMLTPALVRPRAMEGTGFLGQ-ASENVYHLEKDDYYLVGTSEVPLAAYHMDEILDADKLPMRYAGFSPCFRREAGTYGKDTRGIFRVHQFDKVEMFSYVAPEDAENEHKRLLEWEKQWLTGLELPFQVIDVASGDLGASATRKFDCEAWIPTQGKYRELT 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PROAC (Seryl-tRNA synthetase OS=Propionibacterium acnes GN=serS PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 95/241 (39.42%), Postives = 145/241 (60.17%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  +I++TVG P  F    F  KDH ++G+AL   D +   ++SGS+FY L      LE  L+N  +S+  + GFTP+  P +V+ S +E  GF  + A+  VY +   DQ L+GT+E+ +   H D IL ++ LP +Y AFS C+             ++RVH F K+EMFV+C P+E++++HE+L+  E+D  ++L + F+ +D+A+ DLG  A RKFD   W+P   RY EI+
Sbjct:  111 PAGGEDEGVIKETVGTPRDFAAEGFEPKDHLEIGEALGAIDMERGTKISGSRFYVLTGVGAQLEFALLNLAMSKAAQWGFTPMIPPALVKPSAMEGTGFLGQAAD-DVYYLPKDDQYLVGTSEVALAAFHSDEILDDAELPKRYVAFSPCYRREAGSYGKDTRGIFRVHWFDKVEMFVYCLPQEAEAWHEKLLSFEKDFITALQIPFQVLDVASGDLGLSAARKFDCYGWLPTQNRYREIT 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYSM_MOUSE (Seryl-tRNA synthetase, mitochondrial OS=Mus musculus GN=Sars2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 97/243 (39.92%), Postives = 149/243 (61.32%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA---DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQP--EESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG E  + + + VG    F+F  + H ++G+ LDI      + VSG + YYL+    +L+ GL+N+TLS+++ RGFTP+T P+++R +V E CG  P    +Q+Y+I+ +   D  L GTAE+ + G  MD  ++   LP++    S C+             LYRVH F+K+EMF    P  E+S    +E + ++ ++ + LGLHF+ +DM T++LG PAYRKFD+EAWMPG GRYGE++
Sbjct:  179 PVGDESQARVVRVVGEKPAFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGAVLQHGLVNFTLSKLVSRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPVRMVCASTCY-RAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSQLLDEFLSLQVEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRYGEVT 420          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYSM_HUMAN (Seryl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=SARS2 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 97/243 (39.92%), Postives = 150/243 (61.73%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA---DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQP--EESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG E  + +   VG+  VF+F  + H ++G+ LDI      + VSG + YYL+    +L+ GL+N+T +++++RGFTP+T P+++R +V E CG  P    +Q+Y+I+ A   D  L GTAE+ + G  MD  ++   LP++    S C+             LYRVH F+K+EMF    P  E+S    EE + ++ ++ + LGLHF+ +DM T++LG PAYRKFD+EAWMPG GR+GE++
Sbjct:  179 PVGDESQARVLHMVGDKPVFSFQPRGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPDLLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCY-RAETNTGQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVT 420          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_STRGG (Seryl-tRNA synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=serS PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.449e-48
Identity = 97/241 (40.25%), Postives = 144/241 (59.75%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFN---FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVGGE+  ++ +T G    F    F  KDH +LG+AL   D +  A+VSGS+FYYL     +LE+ L+N  +++  + GF P+ TP +VR   +E  GF  + A   VY +E  D  L+GT+E+P+   HMD I+    LPL+YA FS CF             ++RVHQF K+EMF +  P ++++ H  L+  E+   ++L L F+ +D+AT DLG+ A RKFD EAW+P  G+Y E++
Sbjct:  111 PVGGEEDFVVLETHGTIRDFGAEGFEPKDHLELGEALGAIDMERGAKVSGSRFYYLTGVGALLELALVNAAIAQATEAGFVPMLTPALVRPRAMEGTGFLGQAAEN-VYHLEKDDYYLVGTSEVPLAAYHMDEIIDADKLPLRYAGFSPCFRREAGTYGKDTRGIFRVHQFDKVEMFSYVDPADAEAEHRRLLDWEKQWLTALELPFQVIDVATGDLGSSASRKFDCEAWIPTQGKYRELT 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NOCSJ (Seryl-tRNA synthetase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=serS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 97/241 (40.25%), Postives = 139/241 (57.68%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ + +G P  F    F  +DH +LG+ L   D D  A+VSGS+FY+L      LE+ L+N  + +  + GFTP+  P +V+   ++  GF  + A+  VY IEG D  L+GT+E+P+   H D IL    LPL+YAAFS CF             + RVH F K+EMFV+   EES + H+ L+  E++    L L ++ +D+A  DLG  A RKFD EAW+P  GRY E++
Sbjct:  111 PAGGEDDYVVLEEIGTPRDFAADGFEPRDHIELGRMLGAIDLDRGAKVSGSRFYFLTGAGAELELALVNLAMQQARESGFTPVIAPSMVKPRAMDGTGFLGQAAD-DVYRIEGQDMYLVGTSEVPMAAYHSDEILDGGALPLRYAAFSPCFRKEAGSHGKDTKGIIRVHWFDKVEMFVYTTTEESYAEHQRLLAWEKEFLEKLELAYRVIDVAAGDLGLSAQRKFDCEAWIPTQGRYRELT 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NOCFA (Seryl-tRNA synthetase OS=Nocardia farcinica GN=serS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 92/238 (38.66%), Postives = 143/238 (60.08%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ +TVG P  F+F  KDH +LG+AL + D +  A+VSGS+FY+L     +L++GL+     + +  GFT +  P +VR  V+   GF  R A  +VY +   D  L+GT+E+P+ G H D IL  S  P +YA +S CF             + RVHQF K+EMFV+  P+++++ HE L+  E ++ +++ + ++ +D+A  DLG+ A RKFD EAW+P    Y E++
Sbjct:  111 PAGGEDDYVVLETVGTPPEFDFEPKDHLELGEALGLMDMERGAKVSGSRFYFLTGHGALLQLGLLQLAAQKAVANGFTMMIPPVLVRPEVMAGTGFLGRHA-AEVYHLADDDMYLVGTSEVPLAGYHADEILDLSAGPKRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEMFVYTTPDQAEAEHERLLAWEREMLAAIEVPYRIIDVAAGDLGSSAARKFDCEAWVPSQQTYRELT 347          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_TREPS7.666e-5847.16Seryl-tRNA synthetase OS=Treponema pallidum subsp.... [more]
SYS_TREPA7.666e-5847.16Seryl-tRNA synthetase OS=Treponema pallidum GN=ser... [more]
SYS_RHOBA9.371e-5644.30Seryl-tRNA synthetase OS=Rhodopirellula baltica GN... [more]
SYS1_STRAW4.980e-4940.66Seryl-tRNA synthetase 1 OS=Streptomyces avermitili... [more]
SYS_PROAC8.495e-4939.42Seryl-tRNA synthetase OS=Propionibacterium acnes G... [more]
SYSM_MOUSE8.495e-4939.92Seryl-tRNA synthetase, mitochondrial OS=Mus muscul... [more]
SYSM_HUMAN8.495e-4939.92Seryl-tRNA synthetase, mitochondrial OS=Homo sapie... [more]
SYS_STRGG1.449e-4840.25Seryl-tRNA synthetase OS=Streptomyces griseus subs... [more]
SYS_NOCSJ3.228e-4840.25Seryl-tRNA synthetase OS=Nocardioides sp. (strain ... [more]
SYS_NOCFA3.228e-4838.66Seryl-tRNA synthetase OS=Nocardia farcinica GN=ser... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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