FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BACCN (Seryl-tRNA synthetase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=serS PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35
Identity = 89/240 (37.08%), Postives = 126/240 (52.50%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED +++ +T G    FNF  K H+ L   L I DF+ A +V+GS+F + K     LE  LI++ L     + G+  +  P +V  + +   G  P+      + IE  D  LI TAE+PV  +H D ILS   LP++YAAFS CF             L R HQF+K+E+  F +PEES    E+L    E +   L L ++ + M T DLG  A +K+D+E W+P    Y EIS
Sbjct:  113 PVGETEDDNVVVRTWGEVKEFNFEPKPHWDLATDLGIVDFERAGKVTGSRFVFYKGAGARLERALISFMLDLHTEEHGYEEVLPPYMVNRASMTGTGQLPK-FEEDAFLIESEDYFLIPTAEVPVTNMHRDEILSAEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEESYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIEVWLPSYDTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BACC2 (Seryl-tRNA synthetase OS=Bacillus cereus (strain G9842) GN=serS PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35
Identity = 87/240 (36.25%), Postives = 127/240 (52.92%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED +++ +T G    F F  K H+ L   L I DF+ A +V+GS+F + K     LE  LI++ L     + G+  +  P +V  + +   G  P+      + IE  D  LI TAE+PV  +H D IL++  LP++YAAFS CF             L R HQF+K+E+  F +PE+S    E+L    E +   L L ++ + M T DLG  A +K+D+E W+P  G Y EIS
Sbjct:  113 PVGETEDDNVVARTWGEVKEFTFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPK-FEEDAFRIESEDYFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIEVWIPSYGTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CAMJR (Seryl-tRNA synthetase OS=Campylobacter jejuni (strain RM1221) GN=serS PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.134e-35
Identity = 84/239 (35.15%), Postives = 128/239 (53.56%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ ++  K V NP  F+F  K+HF+LG++L+  DF    ++S S+F  LKNE  +L   L+N+ +     RGF  +  P +V  + +   G  P+     +Y ++  D  LI T+EIPV  ++   IL+   LP+K   +S CF             + R HQF K+E+    + E+SDS   E++    DL SSLGL  + + + T DLG  A +  D+E W+PG  +Y EIS
Sbjct:  109 PVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFIRGVKISQSRFCVLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPK-FKEDMYKVDDEDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELVSITKTEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNKYREIS 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ARCFU (Seryl-tRNA synthetase OS=Archaeoglobus fulgidus GN=serS PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.134e-35
Identity = 82/212 (38.68%), Postives = 122/212 (57.55%), Query Frame = 1
Query:   97 ALDIF---DFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVR----SSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            A++IF   D + AA+V+G++FYYL N+ V L+  L  + L  + K  FT ++ P ++R    S V     F+       +Y +E  D  LI T+E P+  +HM  +L E  LPL YA  S CF             ++RVHQF+K+E FVFC PE+S  +HE+LI   E L+  LG+ ++ V++ T DLG  A +K+D+EAWMP   +Y E+
Sbjct:  162 AVEIFGWADLERAAKVAGARFYYLLNDLVWLDFALTMYALDFLRKEDFTIVSPPYMMRREAYSGVTAFSDFEE-----VIYKVEDEDLYLIATSEHPIAAMHMREVLEERELPLLYAGVSPCFRKEAGAHGKDTKGIFRVHQFNKVEQFVFCLPEQSWEWHEKLIENVEKLWQGLGIPYRIVNICTGDLGIVAAKKYDLEAWMPAQAKYREM 368          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYSM_YEAST (Seryl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=DIA4 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.134e-35
Identity = 72/216 (33.33%), Postives = 120/216 (55.56%), Query Frame = 1
Query:   79 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT--QVYSIEGADQCLIGTAEIPVGGIHMDSIL--SESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            H  +    ++ D   A+ V+G  +YYL N+   LE  L+ + L +  + GF+    P I +  +++ CGF PR  N   Q+Y+++  +  L+ TAEIP+ G+  + +L  +      K    S C+             LYRVH+F+K+E+F + +PE S    EE+ + +  +   LG+  K ++M + DLG PA++K+D+EAWMPG G++GEIS
Sbjct:  158 HVDIMLKKNMLDLQTASNVTGMSWYYLLNDGARLEQALVAYALKKANENGFSSCVPPSITKKELIDACGFNPRDMNNERQIYALQDTNLGLVATAEIPLAGLGANKVLELNSGECSKKLVGVSRCYRAEAGARGKDTKGLYRVHEFTKVELFCWSKPETSAKVLEEIKQFQISVVEELGIPAKVLNMPSNDLGNPAFKKYDIEAWMPGRGKFGEIS 373          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THEYD (Seryl-tRNA synthetase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=serS PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 80/224 (35.71%), Postives = 124/224 (55.36%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G PS F+F   +H+ +G+ L I DF+ A++++GS+F  +K     LE  LIN+ L    ++G+  +  P +V    +   G  P+     ++ I   +  LI TAE+PV  IH + ILSE  LP+ Y +++ CF             L R HQF+K+E+  F +PE+S    E L R  E++   LGL ++ V + T DLG  + + +D+E W+PG GRY EIS
Sbjct:  130 GEPSHFDFEPMNHWDIGEILGIIDFERASKIAGSRFAIMKGMGARLERALINFMLDLHTQKGYIEVLPPILVNKVSMTGTGQLPK-FEEDLFKIVDPEFYLIPTAEVPVTNIHREEILSEDELPIYYVSYTPCFRKEAGSHGKDVRGLIRQHQFNKVELVKFVKPEDSYEELESLTRDAEEVLKMLGLPYRVVALCTGDLGFASAKTYDIEVWLPGQGRYREIS 352          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SORC5 (Seryl-tRNA synthetase OS=Sorangium cellulosum (strain So ce56) GN=serS PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 90/251 (35.86%), Postives = 135/251 (53.78%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN----TQVYSIEGA-DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEISVHQLYG 732
            PVG GE+ +++ +  G    F+F  K H+ +G AL + DF+ AA++SG++F  L   A  LE  LI++ L     ++G+  +  P +V+ + +   G  P+ A     TQ    E A D  LI TAE+PV  +H D IL  + LP+ YAA++ CF             L R HQF K+E+  F  PE+S   HE L    E++   LGLH++   + T DLG  + + +D+E W+PG G Y EIS    +G
Sbjct:  115 PVGAGEEGNVVVRAWGEKPSFSFAPKSHWDIGTALGLLDFERAAKLSGARFTVLMGAAARLERALISFMLDLHTREQGYLEVLPPFLVKDTALFGTGNLPKFAEDLFKTQKSDPERAYDLYLIPTAEVPVTNLHADEILDGASLPIAYAAYTPCFRSEAGSHGRDVRGLIRQHQFDKVELVRFSAPEDSARQHELLTSHAEEVLKRLGLHYRVSALCTGDLGFGSQKTYDLEVWLPGQGVYREISSCSNFG 365          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CALS8 (Seryl-tRNA synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=serS PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 86/240 (35.83%), Postives = 129/240 (53.75%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G +D   +  +  G P V +F +K H+++G+ L I DF+ A++VSGS+F + +     LE  LIN+ L   + K G+  L  P +V    +   G  P+       + +  D  LI TAE+PV   H + IL E  LP+KY A+S CF             L R HQF+K+E+  F +PE+S    E+L    ED+   LGL ++ V + + DLG  + + +D+E WMP  GRY EIS
Sbjct:  112 PIGKDDTENVEVRRWGEPRVPDFEIKPHWEIGEKLGILDFERASKVSGSRFTFYRGLGARLERALINFMLDLHIEKHGYVELFPPFLVARKSMIGTGQLPKFEEDAFKTTD--DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQFNKVELVKFAKPEDSYDELEKLTADAEDVLKHLGLPYRVVLLCSGDLGFSSAKTYDIEVWMPSYGRYVEIS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BACHK (Seryl-tRNA synthetase OS=Bacillus thuringiensis subsp. konkukian GN=serS PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 87/240 (36.25%), Postives = 127/240 (52.92%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED +++ +T G    F F  K H+ L   L I DF+ A +V+GS+F + K     LE  LI++ L     + G+  +  P +V  + +   G  P+      + IE  D  LI TAE+PV  +H D IL++  LP++YAAFS CF             L R HQF+K+E+  F +PE+S    E+L    E +   L L ++ + M T DLG  A +K+D+E W+P  G Y EIS
Sbjct:  113 PVGETEDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPK-FEEDAFRIESEDYFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIEVWIPSYGTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BACCQ (Seryl-tRNA synthetase OS=Bacillus cereus (strain Q1) GN=serS PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 87/240 (36.25%), Postives = 127/240 (52.92%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED +++ +T G    F F  K H+ L   L I DF+ A +V+GS+F + K     LE  LI++ L     + G+  +  P +V  + +   G  P+      + IE  D  LI TAE+PV  +H D IL++  LP++YAAFS CF             L R HQF+K+E+  F +PE+S    E+L    E +   L L ++ + M T DLG  A +K+D+E W+P  G Y EIS
Sbjct:  113 PVGETEDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPK-FEEDAFRIESEDYFLIPTAEVPVTNMHRDEILNKDQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIEVWIPSYGTYREIS 351          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_BACCN2.400e-3537.08Seryl-tRNA synthetase OS=Bacillus cereus subsp. cy... [more]
SYS_BACC22.400e-3536.25Seryl-tRNA synthetase OS=Bacillus cereus (strain G... [more]
SYS_CAMJR3.134e-3535.15Seryl-tRNA synthetase OS=Campylobacter jejuni (str... [more]
SYS_ARCFU3.134e-3538.68Seryl-tRNA synthetase OS=Archaeoglobus fulgidus GN... [more]
SYSM_YEAST3.134e-3533.33Seryl-tRNA synthetase, mitochondrial OS=Saccharomy... [more]
SYS_THEYD4.093e-3535.71Seryl-tRNA synthetase OS=Thermodesulfovibrio yello... [more]
SYS_SORC54.093e-3535.86Seryl-tRNA synthetase OS=Sorangium cellulosum (str... [more]
SYS_CALS84.093e-3535.83Seryl-tRNA synthetase OS=Caldicellulosiruptor sacc... [more]
SYS_BACHK4.093e-3536.25Seryl-tRNA synthetase OS=Bacillus thuringiensis su... [more]
SYS_BACCQ4.093e-3536.25Seryl-tRNA synthetase OS=Bacillus cereus (strain Q... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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