FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_DESAP (Seryl-tRNA synthetase OS=Desulforudis audaxviator (strain MP104C) GN=serS PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 84/225 (37.33%), Postives = 122/225 (54.22%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F F  + H++LG+ L+I DF    +VSG++F + +     LE  LI + L   V + G+T L  P +V +  +   G  P+ A   +Y +E  D  L+ TAE+PV     D IL    LP KYAA+S CF             L R HQF+K+E+  F +PE+S+   E+L+R  E++   L L ++ V + T DLG  + R +D+E WMPG G Y EIS
Sbjct:  127 GEPPAFGFEPRPHWELGEELNILDFARGGKVSGARFSFCRGAGARLERALICFMLDLHVDRHGYTELFPPFLVNAQSMTGTGQLPKFA-ADMYKVENEDYYLVPTAEVPVTNYLRDEILDGDTLPRKYAAYSACFRAEAGAAGRDTRGLIRQHQFNKVELVKFTRPEDSEDELEKLVRDAEEVLRLLRLPYRVVLLCTGDLGFSSSRTYDLEVWMPGQGVYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLOBB (Seryl-tRNA synthetase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=serS PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.118e-35
Identity = 81/228 (35.53%), Postives = 123/228 (53.95%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSE-VIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K  G P+ FNF  K H+ LG  L+I DF+   +V+GS+F   K     LE  +IN+ L +   + G+T +  P +V    +   G  P+      + +E     LI TAE+PV  ++ + +LS  +LP+K+AA+S CF             L R HQF+K+E+  FC+PE+S +  ++L+   E +   LGL ++ V +   DLG  A  K+D+E WMP   RY EIS
Sbjct:  127 KKWGEPTKFNFEPKAHWDLGTDLNILDFERGGKVAGSRFTVYKGLGARLERSIINYFLDKHTTENGYTEILPPYMVNRDSMTGTGQLPK-FEEDAFKVENNGYFLIPTAEVPVTNMYRNEVLSGDILPIKHAAYSACFRAEAGSAGRDTRGLVRQHQFNKVELVKFCKPEDSYAELDKLVEDAESVLQGLGLPYRIVRICKGDLGFTAALKYDIEVWMPSYNRYVEIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_DESOH (Seryl-tRNA synthetase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=serS PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 81/240 (33.75%), Postives = 128/240 (53.33%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G  E  ++  + VG P  F+F  + H ++G+AL IFDF  AA+++G++F   K    ++E  LIN+ L     + G+T    P +V +  +   G  P+     ++ +E     LI TAE+PV  I  D IL+E+ LP+KY A++ CF             L R HQF+K+E+  F  PE S    E+L+   E +   LGL ++ + + + D+G  A + +D+E W P   RY EIS
Sbjct:  113 PIGPDESANVTEREVGTPPAFDFAPRPHEEIGEALGIFDFARAAKIAGARFPLYKGAGALMERALINFMLDIHTTEHGYTECLPPLMVNAKTMTGTGQLPK-FEEDLFKLERWGFYLIPTAEVPVTNIFADEILNEADLPIKYTAYTPCFRSEAGSYGKDTKGLIRQHQFNKVELVKFAHPEHSYDELEKLLADAETILQRLGLAYRVITLCSGDMGFSAAKTYDIEVWFPAQNRYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CHLFF (Seryl-tRNA synthetase OS=Chlamydophila felis (strain Fe/C-56) GN=serS PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 82/229 (35.81%), Postives = 123/229 (53.71%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCL--IGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K+VG+PS F+FP K H +L + L I DF    + SGS +   KN  V+LE  L+ + L +    GF     P +V+  ++   G  P+  + Q Y +E  DQ L  I TAE+ + G H   I +E  LP+ YAA + CF             L RVHQF K+EMF F  PE++D  +E+++ I E++ + L L ++   ++T D+   A +  D E W+PG   Y E+S
Sbjct:  124 KSVGSPSTFSFPPKHHLELNQKLQILDFKLPGKTSGSGWPAYKNRGVLLEWALLTYLLQKQQSHGFQLWLPPLLVKREILFGSGQIPK-FDGQYYRVEDGDQSLYLIPTAEVVLNGFHSQEIFNEKDLPIYYAACTPCFRREAGAAGAHERGLVRVHQFHKVEMFAFTTPEQADQAYEKMLSIVEEILTELKLPYRLSLLSTGDMSFTASKTIDAEVWLPGQKSYYEVS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_UNCTG (Seryl-tRNA synthetase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=serS PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.555e-34
Identity = 91/242 (37.60%), Postives = 133/242 (54.96%), Query Frame = 1
Query:    1 PVGGE--DCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA--DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG +  D  IIR  VG P  F+F  K H+++G+ L I DF AA+++SG  F  LKNE   LE  +I++ L +  ++G+  +TTP +V  + +   G  P   N +  S + A  D  LI TAE+PV  I+ D +L ES LP KY ++S CF             L R HQF K+E+  F +PE S    E L+    ++   LGL ++ V ++T D+G  + + +D+E W  G G Y EIS
Sbjct:  113 PVGKDEKDNKIIR-FVGKPEKFSFKPKYHWEIGEKLGIIDFAAASKISGPHFAVLKNEGSALERAIISFFLDKHKEKGYKEITTPYLVNRASMTGTGQLP---NLEEDSFKCAIDDLYLIPTAEVPVTNIYRDDVLEESALPQKYVSYSACFRRESGSYGKDTKGLIRNHQFDKVELVKFAKPETSSEELESLVLDAGNVLELLGLPYRVVLLSTGDIGFSSSKTYDLEVWFAGYGIYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NITMS (Seryl-tRNA synthetase OS=Nitrosopumilus maritimus (strain SCM1) GN=serS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.031e-34
Identity = 77/239 (32.22%), Postives = 132/239 (55.23%), Query Frame = 1
Query:    1 PVGGEDCSI--IRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            PVG +D +   +RK  G    F+F + DH  + + LD+ D + AA+V+G++FYYLKN+ V L   LI++ L  + ++ ++ +  P ++  S +E            +Y +E  D  +IGT+E  +  +H   I+    LP++YA  S CF             ++RVHQF K+E FV+ +PE+S   HE+++ + E+ Y  L +  + + ++T D+G  + + +D+EAWM G   Y EI
Sbjct:  112 PVGPDDTANKEMRKW-GEIPQFDFKINDHIDMSENLDLVDLERAAKVAGARFYYLKNDLVRLNQSLIHFALDFLAEKEYSLVQPPYMINRSSMEGAVIADDFEEV-IYKVEEEDLYMIGTSEHAMAAMHSKEIIEGKDLPIRYAGVSPCFRKEAGAHGRDQKGIFRVHQFDKIEQFVYARPEDSWKEHEKMLAVAEEFYQKLEIPHRVMLLSTGDMGKISAKTYDIEAWMAGQNSYREI 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_GEOKA (Seryl-tRNA synthetase OS=Geobacillus kaustophilus GN=serS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.031e-34
Identity = 84/240 (35.00%), Postives = 130/240 (54.17%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G  E+ ++  +  G P  F+F  K H+++   L + DF+ AA+V+GS+F + K     LE  LIN+ L   + + G+  +  P +V  + +   G  P+ A    + ++  D  LI TAE+PV  +H D IL+   LP+ YAA+S CF             L R HQF+K+E+  F +PE+S    E+L R  E +   LGL ++ V + T DLG  A + +D+E W+P  G Y EIS
Sbjct:  113 PIGQSEEDNVEVRRWGEPRSFSFEPKPHWEIADRLGLLDFERAAKVAGSRFVFYKGLGARLERALINFMLDIHLDEFGYEEVLPPYLVNRASMIGTGQLPKFAE-DAFHLDSEDYFLIPTAEVPVTNLHRDEILAADDLPIYYAAYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYDELEKLTRQAETILQRLGLPYRVVALCTGDLGFSAAKTYDIEVWLPSYGTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_NITSB (Seryl-tRNA synthetase OS=Nitratiruptor sp. (strain SB155-2) GN=serS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 81/239 (33.89%), Postives = 129/239 (53.97%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ +++ KTV  P  F+F  K+H++LG+ L   DF+   +++ S+F  LK EA  LE  LIN+ L    + GF  +  P +  S+ +   G  P+     ++ I   D  +I TAE+P+  ++ D I+ +   P+K  A++ CF             + R HQF K+E+    +PEESD   +E+++    L + LGL  + V + T DLG  A +  D+E W+PG G+Y EIS
Sbjct:  113 PVGENEEDNVVLKTVLEPKGFDFEPKEHWELGEKLGWIDFERGVKLAKSRFSVLKKEAARLERALINFMLDHNKEYGFEEVCVPFMANSATLLGTGQLPK-FEEDLFKICDEDLYMIPTAEVPLTNLYRDEIIKDLEDPIKLTAYTPCFRKEAGSGGRDVRGMIRQHQFDKVELVAITRPEESDKVFDEMVKCASSLLAKLGLPHRHVMLCTGDLGFSAAKTIDLEVWLPGQGKYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LACS1 (Seryl-tRNA synthetase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=serS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 83/239 (34.73%), Postives = 128/239 (53.56%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++    VG P  F+F  K H+ +G+ L I DFD AA+VSG++F + K     LE  + N+ L E  K G+T +  P IV+S  +   G  P+  + QVY + G D  LI TAE+P+   + + ++    LP+ + A S  F             L R+HQF+K+EM  + +PE+S +  E++ +   ++   LGL +  + ++T D+G  A    D+E WMP    Y EIS
Sbjct:  113 PVGPDEDSNVELYKVGTPRKFDFEPKAHWDIGEDLGILDFDRAAKVSGARFVFYKGLGAKLERAVYNFMLDEHAKEGYTEVIPPYIVKSKSMYGTGQFPKFKD-QVYQVNGEDMTLIPTAEVPLTNYYREEVIPTEDLPVYFTALSPSFRSEAGSAGRDTRGLIRMHQFNKVEMVKYTKPEDSYNELEKMTKNAGNIMEKLGLPYHVITLSTGDMGFSAAMTHDLEVWMPAQDTYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLOTE (Seryl-tRNA synthetase OS=Clostridium tetani GN=serS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 82/225 (36.44%), Postives = 122/225 (54.22%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G  + F F  K H+ LG  LDI DF+ A +V+GS+F + K     LE  +IN+ L + + + G+T +  P +V    +   G  P+      + +E  D  LI TAE+PV  ++ D IL+ S LP+K+ A+S CF             L R HQF+K+E+  F +PE+S    E+L +  ED+   LG+ ++ V +   DLG  A  K+D+E WMP   RY EIS
Sbjct:  130 GEATTFEFEPKAHWDLGVNLDILDFERAGKVTGSRFTFYKGLGARLERAVINYYLDTHIDEHGYTEILPPYMVNRKSMTGTGQLPK-FEEDAFRLEEQDYFLIPTAEVPVTNLYRDEILNGSDLPMKHVAYSACFRSEAGSAGRDTRGLVRQHQFNKVELVKFTKPEQSYEELEKLTKDAEDVLQGLGIPYRVVRICKGDLGFTAALKYDIEVWMPSYNRYVEIS 353          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_DESAP6.982e-3537.33Seryl-tRNA synthetase OS=Desulforudis audaxviator ... [more]
SYS_CLOBB9.118e-3535.53Seryl-tRNA synthetase OS=Clostridium botulinum (st... [more]
SYS_DESOH1.191e-3433.75Seryl-tRNA synthetase OS=Desulfococcus oleovorans ... [more]
SYS_CHLFF1.191e-3435.81Seryl-tRNA synthetase OS=Chlamydophila felis (stra... [more]
SYS_UNCTG1.555e-3437.60Seryl-tRNA synthetase OS=Uncultured termite group ... [more]
SYS_NITMS2.031e-3432.22Seryl-tRNA synthetase OS=Nitrosopumilus maritimus ... [more]
SYS_GEOKA2.031e-3435.00Seryl-tRNA synthetase OS=Geobacillus kaustophilus ... [more]
SYS_NITSB2.653e-3433.89Seryl-tRNA synthetase OS=Nitratiruptor sp. (strain... [more]
SYS_LACS12.653e-3434.73Seryl-tRNA synthetase OS=Lactobacillus salivarius ... [more]
SYS_CLOTE2.653e-3436.44Seryl-tRNA synthetase OS=Clostridium tetani GN=ser... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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