FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_DESAA (Seryl-tRNA synthetase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=serS PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 83/240 (34.58%), Postives = 128/240 (53.33%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ ++  K  G P  F+F  + H+ +G+ L I DF+ AA ++GS+F     +  ++E  LIN+ L +   + G+  +  P IV    +   G  P+     ++ +EG +  LI TAE+PV  IH + IL E  LPL Y AF+ CF             L R HQF+K+EM  F  P+ S    E +++  E +   LGL ++ +++ T D+G  A + +D+E WMP  G Y EIS
Sbjct:  112 PVGKDENDNVEVKRRGEPRNFDFEPQAHWDIGEGLGILDFERAARITGSRFPLYFGDGALMERALINFMLMTHTTRHGYKEVLPPFIVNRKTMTGTGQLPK-FEEDLFKLEGWEYFLIPTAEVPVTNIHAEEILEEEALPLYYTAFTPCFRSEAGSAGKDTRGLIRQHQFNKVEMVKFSHPDNSYDELEGMLQNAETILQELGLPYRVLNLCTGDIGFGAAKTYDLEVWMPQQGVYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLOPE (Seryl-tRNA synthetase OS=Clostridium perfringens GN=serS PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 80/228 (35.09%), Postives = 120/228 (52.63%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSE-VIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K  G P+ FNF  K H+ LG  LD+ DF+   +V+GS+F   K     LE  +IN+ L +   + G+T +  P +V    +   G  P+      + +E     LI TAE+PV  ++ +  L    LP+K+AA+S CF             L R HQF+K+E+  FC+PE+S    ++L++  E +   LGL ++ V +   DLG  A  K+D+E WMP   RY EIS
Sbjct:  127 KRWGEPTKFNFEPKAHWDLGTDLDLLDFERGGKVAGSRFTVYKGMGARLERSIINYFLDKHTFENGYTEVLPPYMVNRDSMTGTGQLPK-FEEDAFKVENNGYFLIPTAEVPVTNMYRNETLEGDKLPIKHAAYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFCKPEQSYEELDKLVQDAESVLQGLGLPYRIVRICKGDLGFTAALKYDIEVWMPSYNRYVEIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLOP1 (Seryl-tRNA synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=serS PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 80/228 (35.09%), Postives = 120/228 (52.63%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSE-VIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K  G P+ FNF  K H+ LG  LD+ DF+   +V+GS+F   K     LE  +IN+ L +   + G+T +  P +V    +   G  P+      + +E     LI TAE+PV  ++ +  L    LP+K+AA+S CF             L R HQF+K+E+  FC+PE+S    ++L++  E +   LGL ++ V +   DLG  A  K+D+E WMP   RY EIS
Sbjct:  127 KRWGEPTKFNFEPKAHWDLGTDLDLLDFERGGKVAGSRFTVYKGMGARLERSIINYFLDKHTFENGYTEVLPPYMVNRDSMTGTGQLPK-FEEDAFKVENNGYFLIPTAEVPVTNMYRNETLEGDKLPIKHAAYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFCKPEQSYEELDKLVQDAESVLQGLGLPYRIVRICKGDLGFTAALKYDIEVWMPSYNRYVEIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ALKMQ (Seryl-tRNA synthetase OS=Alkaliphilus metalliredigens (strain QYMF) GN=serS PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 85/235 (36.17%), Postives = 127/235 (54.04%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            +D +I  +T G P+ F+F  K H+++G  L I DF+AA++V+GS+F   +  A  LE  LI++ L     + G+T L  P +V  + +   G  P+      + I   D  L+ TAE+PV  I+ D I+    LP+KY A++ CF             L R HQF+K+E+  F +PE+S    E+L    E +   LGL ++ V + T DLG  A  K+D+E WMP   RY EIS
Sbjct:  118 DDDNIEVRTWGEPTQFSFEPKPHWEVGVNLGILDFEAASKVTGSRFTLYRGMAARLERALISFMLDLHTDEHGYTELLPPFMVNRASMIGTGQLPK-FEEDAFKIPQKDYFLVPTAEVPVTNIYRDDIIEGDQLPIKYVAYTPCFRSEAGSAGRDTRGLIRQHQFNKVELVKFVRPEDSYEELEKLTNNAEKVLQLLGLPYRIVRICTGDLGFTAAFKYDIEVWMPSYNRYVEIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLOPS (Seryl-tRNA synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=serS PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.008e-33
Identity = 79/228 (34.65%), Postives = 120/228 (52.63%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSE-VIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K  G P+ FNF  K H+ LG  LD+ DF+   +++GS+F   K     LE  +IN+ L +   + G+T +  P +V    +   G  P+      + +E     LI TAE+PV  ++ +  L    LP+K+AA+S CF             L R HQF+K+E+  FC+PE+S    ++L++  E +   LGL ++ V +   DLG  A  K+D+E WMP   RY EIS
Sbjct:  127 KRWGEPTKFNFEPKAHWDLGTDLDLLDFERGGKIAGSRFTVYKGMGARLERSIINYFLDKHTFENGYTEVLPPYMVNRDSMTGTGQLPK-FEEDAFKVENNGYFLIPTAEVPVTNMYRNETLEGDKLPIKHAAYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFCKPEQSYEELDKLVQDAESVLQGLGLPYRIVRICKGDLGFTAALKYDIEVWMPSYNRYVEIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SULAC (Seryl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=serS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.317e-33
Identity = 75/215 (34.88%), Postives = 117/215 (54.42%), Query Frame = 1
Query:   67 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            PV     L   L + D   A EV+ S+FYYL N+ V L++ L+ + +  +  RG+T +  P ++R  V+ K           +Y IEG D  LI TAE  +  ++    + +  LPLK    S  F             ++RVHQF K+E F+F  PE+S  YHEE+I   E+++  LGL ++ +++A+ DLGAPA +K+D+E WMP   ++ E+
Sbjct:  158 PVGHADMLENVLRLGDTKKAGEVAASRFYYLFNDIVWLDLALLLYAIDTITSRGYTLVLPPYMLRGEVI-KSVIDLDTFKDAIYKIEGEDLYLIATAEHSIAALYYKEEIPKEELPLKLVGVSPAFRKEAGAANKDLKGIFRVHQFHKVEQFIFSSPEDSWKYHEEMIENAEEIFRGLGLPYRVINIASGDLGAPAAKKYDLEVWMPAQAKFREM 371          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ANATD (Seryl-tRNA synthetase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=serS PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.317e-33
Identity = 86/240 (35.83%), Postives = 127/240 (52.92%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG +D   +  +  G     +F +K H+++G  L I DF+ A++VSGS+F + +     LE  LIN+ L   + K G+T L  P +V    +   G  P+       + +  D  LI TAE+PV   H + IL E  LP+KY A+S CF             L R HQF+K+E+  F +PE+S    E+L    ED+   LGL ++ V + + DLG  + + +D+E WMP  GRY EIS
Sbjct:  112 PVGKDDTENVEVRRWGEVREPDFEIKPHWEIGVNLGILDFERASKVSGSRFTFYRGLGARLERALINFMLDLHIEKHGYTELFPPFLVARKSMIGTGQLPKFEEDAFKTTD--DYFLIPTAEVPVTNYHREEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQFNKVELVKFTKPEDSYDELEKLTADAEDVLKELGLPYRVVLLCSGDLGFSSAKTYDIEVWMPSYGRYVEIS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CHLPN (Seryl-tRNA synthetase OS=Chlamydia pneumoniae GN=serS PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 81/229 (35.37%), Postives = 124/229 (54.15%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCL--IGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K+VG+  +F+FP K H +L + LDI DF AAA+ +GS +   KN  V+LE  L+ + L +    GF     P +V+  ++   G  P+  + Q Y +E  +Q L  I TAE+ + G     IL+E  LPL YAA + CF             L RVHQF K+EMF F  P + D  +E+++ I E++ + L L ++   ++T D+   A +  D E W+PG   + E+S
Sbjct:  124 KSVGDLPIFSFPPKHHLELNQELDILDFQAAAKTTGSGWPAYKNRGVLLEWALLTYMLQKQAAHGFQLWLPPLLVKKEILFGSGQIPK-FDGQYYRVEDGEQYLYLIPTAEVVLNGFRSQDILTEKELPLYYAACTPCFRREAGAAGAQERGLVRVHQFHKVEMFAFTTPNQDDIAYEKMLSIVEEMLTELKLPYRLSLLSTGDMSFTASKTIDAEVWLPGQKAFYEVS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CENSY (Seryl-tRNA synthetase OS=Cenarchaeum symbiosum GN=serS PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 80/229 (34.93%), Postives = 125/229 (54.59%), Query Frame = 1
Query:   25 IIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            ++RK VG P+  + P K H +L     + D   AA+VSG++FYYLK   V L   LI+ +L  +  RG+T +  P ++R + +E            +Y IE  D  LIGT+E  +  +H D I+ E  LPL+YA  S CF             ++RVHQF K+E FVF +PE+S   H+ ++ I E+ Y  LG+ ++ V +++ D+G  + + +D+E WM     Y E+
Sbjct:  122 VLRKWVGTPTP-SVP-KGHEELAVGRGLLDMKRAAKVSGARFYYLKGSLVRLNQALISHSLDFLGSRGYTLVQPPYLIRRNAMEGA-IIAEDFEDVIYKIEDDDLYLIGTSEHAMAAMHSDEII-EGGLPLRYAGVSPCFRKEAGAHGKDQKGIFRVHQFDKIEQFVFSKPEDSWREHDRMLEITEEFYQGLGIPYRVVLLSSGDMGKVSAKTYDIECWMAAQDAYREV 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PROMS (Seryl-tRNA synthetase OS=Prochlorococcus marinus (strain AS9601) GN=serS PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.246e-33
Identity = 80/239 (33.47%), Postives = 128/239 (53.56%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G ++   ++ KT G+P +    +K H+++G++L+IFD   + ++S S+F  L      LE  LIN+ L    K G+  L  P +V S  +   G  P+ +N + +     D  L  TAE+P+  +H + ++    LPLKY A+S CF             L R+HQF+K+E++ FC P +S   H+E+    E +   L L ++ VD+ T DLG  + R FD+E W+P    Y EIS
Sbjct:  117 PIGKDESENLQIKTWGDPLIKE-NIKSHWEIGESLNIFDSIKSTKISKSRFITLIGNGARLERALINFMLDMHTKNGYLELMPPALVNSESLTGSGQLPKFSN-ESFKCSNDDLWLSPTAEVPLTALHRNELIDPKHLPLKYVAYSPCFRREAGSYGRDTKGLIRLHQFNKVELYWFCDPSKSLEAHKEITTDAESILKKLNLPYRLVDICTGDLGFSSSRTFDLEVWLPSSKCYREIS 353          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_DESAA7.719e-3434.58Seryl-tRNA synthetase OS=Desulfatibacillum alkeniv... [more]
SYS_CLOPE7.719e-3435.09Seryl-tRNA synthetase OS=Clostridium perfringens G... [more]
SYS_CLOP17.719e-3435.09Seryl-tRNA synthetase OS=Clostridium perfringens (... [more]
SYS_ALKMQ7.719e-3436.17Seryl-tRNA synthetase OS=Alkaliphilus metalliredig... [more]
SYS_CLOPS1.008e-3334.65Seryl-tRNA synthetase OS=Clostridium perfringens (... [more]
SYS_SULAC1.317e-3334.88Seryl-tRNA synthetase OS=Sulfolobus acidocaldarius... [more]
SYS_ANATD1.317e-3335.83Seryl-tRNA synthetase OS=Anaerocellum thermophilum... [more]
SYS_CHLPN1.720e-3335.37Seryl-tRNA synthetase OS=Chlamydia pneumoniae GN=s... [more]
SYS_CENSY1.720e-3334.93Seryl-tRNA synthetase OS=Cenarchaeum symbiosum GN=... [more]
SYS_PROMS2.246e-3333.47Seryl-tRNA synthetase OS=Prochlorococcus marinus (... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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