FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_COREF (Seryl-tRNA synthetase OS=Corynebacterium efficiens GN=serS PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 7.192e-48
Identity = 89/238 (37.39%), Postives = 143/238 (60.08%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ + VG P  F+F  KDH +LG++L + D     +VSG++FYYL  +  ML++G++     +    GFT +  P +VR  ++   GF    +  ++Y +E  D  L+GT+E+ + G H D I+  +  P+KYA +S CF             + RVHQF K+EMFV+C+PEE++  H  L+ +E+D+ +++ + ++ +D+A  DLGA A RKFD EAW+P  G Y E++
Sbjct:  110 PAGGEDDFVVLEHVGEPRTFDFEPKDHLELGESLGLIDMKRGTKVSGARFYYLTGDGAMLQLGMLTLAAQKATAAGFTMMIPPVLVRPEIMAGTGFLGDHSE-EIYYLERDDMYLVGTSEVALAGYHKDEIIDLNNGPVKYAGWSSCFRREAGSYGKDTRGILRVHQFDKVEMFVYCKPEEAEEQHRRLLEMEKDMLAAVEVPYRIIDVAGGDLGASAARKFDTEAWVPTQGTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYSM_BOVIN (Seryl-tRNA synthetase, mitochondrial OS=Bos taurus GN=SARS2 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.602e-47
Identity = 96/243 (39.51%), Postives = 147/243 (60.49%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA---DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQP--EESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG E  + +   VG+   F+F  + H ++ + LDI      + VSG + YYL+    +L+ GL+N+TL+++I RGFTP+T P+++R  V E CG  P    +Q+Y+I+ +   D  L GTAE+ + G  MD  ++   LP++    S C+             LYRVH F+K+EMF    P  E+S    EE + ++ ++ + LGLHF+ +DM T++LG PAYRKFD+EAWMPG GR+GE++
Sbjct:  179 PVGDESQARVLHVVGDKPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCY-RAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVT 420          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_STRCO (Seryl-tRNA synthetase OS=Streptomyces coelicolor GN=serS PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.038e-46
Identity = 95/241 (39.42%), Postives = 142/241 (58.92%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVGGE+  +  +T G    F    F  +DH +LG+ L   D +  A+VSGS+FY+L     +LE+ L+N  +++    GFTP+ TP +VR   +   GF  + A   VY ++  D  L+GT+E+P+   HMD IL    LPL+YA FS CF             ++RVHQF K+EMF +  PE+S + H+ L+  E+   +SL L F+ +D+A+ DLG+ A RK+D EAW+P  G+Y E++
Sbjct:  111 PVGGEEDFVTLETHGTHRDFAAEGFEPRDHLELGQLLGAIDVERGAKVSGSRFYFLTGVGALLELALVNAAIAQATAAGFTPMLTPALVRPQSMAGTGFLGQAAQ-DVYHLDKDDLYLVGTSEVPLAAYHMDEILDGDRLPLRYAGFSPCFRREAGSHGKDTRGIFRVHQFDKVEMFSYVLPEDSQAEHQRLLEWEKQWLTSLELPFRVIDVASADLGSSAARKYDCEAWIPTQGKYRELT 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CORGL (Seryl-tRNA synthetase OS=Corynebacterium glutamicum GN=serS PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.038e-46
Identity = 85/238 (35.71%), Postives = 146/238 (61.34%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ +T+G P  F+F  KDH +LG++L + D     +VSG++FYYL  +  ML++G++     +  + GF+ +  P +VR  ++   GF    +  ++Y +E  D  L+GT+E+ + G H D I+  +  P+KYA +S CF             + RVHQF K+EMFV+C+PE+++  H++L+ +E+++ +++ + ++ +D+A  DLGA A RKFD EAW+P    Y E++
Sbjct:  110 PAGGEDDFVVLETIGEPRTFDFEPKDHLELGESLGLIDMKRGTKVSGARFYYLTGDGAMLQLGMLMLAAQKAREAGFSMMIPPVLVRPEIMAGTGFLGDHSE-EIYYLERDDMYLVGTSEVALAGYHKDEIIDLNEGPVKYAGWSSCFRREAGSYGKDTRGILRVHQFDKVEMFVYCKPEDAEDVHQQLLGMEKEMLAAIEVPYRVIDVAGGDLGASAARKFDTEAWVPTQDTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_KOCRD (Seryl-tRNA synthetase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=serS PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.771e-46
Identity = 95/241 (39.42%), Postives = 138/241 (57.26%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  +  +T G P  F    F  +DH +LG+ LD  D +  A+VSGS+FY+LK +   LE  L+       +  GF P+TTP +VR  ++   GF     + ++Y +   D  L+GT+E+ + G H D IL  S  PL+YA +S C+             + RVHQF+KLEMFV+C PE++ + HE L+  EE +  + GL ++ +D A  DLG  A RKFD EAW+P  G+Y E++
Sbjct:  111 PAGGEDDFVQLRTEGTPRDFAAEGFEPRDHLELGELLDGIDMERGAKVSGSRFYFLKRDVARLETALLMAAQDLALDNGFIPMTTPNLVRPGIMNGTGFDVEH-DDEIYRVGKDDLYLVGTSEVALAGYHSDEILDLSGGPLRYAGWSSCYRREAGSAGKDTRGIIRVHQFNKLEMFVYCHPEDAAAEHERLLAWEEQMLQACGLAYRVIDTAAGDLGTSAARKFDCEAWIPTQGKYRELT 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ACIC1 (Seryl-tRNA synthetase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=serS PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.313e-46
Identity = 93/238 (39.08%), Postives = 137/238 (57.56%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGE+  ++ + +G P  F+FP +DH +LG+ L   D + AA+VSGS+FYYL     +LE  L++  L + +  GF P+  P +VR   +E  GF  + A   V+ +E  D  L+GT+E+ +   HM  IL  + LP +Y  FS CF             + RVHQF K+EMF F    E+ + H  L+  E+   ++L + F+ +D+AT DLGA A RKFD EAW+P  GRY E++
Sbjct:  111 PRGGEEDFVVLEEIGTPPTFSFPPRDHLELGERLGAIDVERAAKVSGSRFYYLTGVGALLEFALVDLALRQAVTAGFVPVIPPVLVRPPAMEGTGFLGQAAEN-VFHLEKDDFYLVGTSEVSLAAYHMGEILDAAQLPRRYVGFSTCFRREAGSHGKDTRGIIRVHQFDKVEMFSFTTVGEAAAEHRRLLEWEKQFLTALEIPFRVIDVATGDLGASAARKFDCEAWIPTQGRYREVT 347          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THEFY (Seryl-tRNA synthetase OS=Thermobifida fusca (strain YX) GN=serS PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46
Identity = 88/238 (36.97%), Postives = 137/238 (57.56%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVGG D  ++ + VG P  F+F  +DH +LG+ L   D +  A+VSG++FY+L     +LE+GL+N  +   +  GFTP+  P +V+   ++  GF    A  +VY +   D  L+GT+E+P+ G H + IL    LP +Y  +S CF             + RVHQF+K+EMFV+  P+E+   H  L+  E ++   + + ++ VD+A  DLG  A RK+D EAW+P  GRY E++
Sbjct:  111 PVGGVDDFVVVEEVGTPRQFDFTPRDHLELGEMLGAIDTERGAKVSGARFYFLTGVGALLELGLLNLAMQRAVANGFTPMIPPVLVKPETMDGTGFLGEHA-AEVYHLPADDLYLVGTSEVPLAGYHANEILPADALPTRYIGWSSCFRREAGSYGKDTRGIIRVHQFNKVEMFVYAHPDEAHEEHLRLLAWEREMLDLIEVPYRVVDIAAGDLGTSAARKYDCEAWLPSQGRYRELT 347          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CORDI (Seryl-tRNA synthetase OS=Corynebacterium diphtheriae GN=serS PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46
Identity = 90/239 (37.66%), Postives = 143/239 (59.83%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT-QVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  I+ + VG P  F+F  KDH  LG++L + D     +V G++FYYL  +   L++G++N    +  + GF  +  P +VR  V+   GF   GA++ ++Y +E  D  L+GT+E+ + G H D I+  S  P+KYA +S CF             + RVHQF KLEMFV+C+PEE+ + H+ L+ +E ++ +++ + ++ +D+A  DLG+ A RKFD EAW+P    Y E++
Sbjct:  110 PAGGEDDYIVLEHVGTPRTFDFEPKDHLDLGESLGLIDVKRGTKVGGARFYYLTGDGAFLQLGMLNLAAQKARENGFQLMIPPVLVRPEVMSGTGFL--GAHSDEIYYLERDDLYLVGTSEVALAGYHQDEIIDLSDGPIKYAGWSSCFRREAGSYGKDTRGILRVHQFDKLEMFVYCKPEEAVAQHQALLNMEREMLAAVEVPYRIIDVAGGDLGSSAARKFDTEAWIPTQNTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCS2 (Seryl-tRNA synthetase OS=Mycobacterium smegmatis GN=serS PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.341e-45
Identity = 87/238 (36.55%), Postives = 142/238 (59.66%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++  TVG P     P KDH +LG++L + D +  A+VSGS+FY+L     +L++GL+       ++ GFT +  P +VR  V+   GF    A+ +VY +E  D  L+GT+E+P+ G H D IL  S  P +YA +S CF             + RVHQF K+E F++C+PE++++ H+ L+  + ++ +++ + ++ +D+A  DLG+ A RK+D EAW+P    Y E++
Sbjct:  111 PAGGEDDFVVLDTVGEPRAIENP-KDHLELGESLGLIDMERGAKVSGSRFYFLTGAGALLQLGLLQLATQVAVQNGFTLMIPPVLVRPEVMRGTGFLGAHAD-EVYRLEADDMYLVGTSEVPLAGYHADEILDLSAGPRRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFIYCKPEDAEAEHQRLLGWQREMLAAIEVPYRVIDVAAGDLGSSAARKYDCEAWVPTQQTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCMM (Seryl-tRNA synthetase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=serS PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.341e-45
Identity = 89/238 (37.39%), Postives = 141/238 (59.24%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   + + VG P   + P KDH +LG++L + D    A+V+GS+FY+L  +  +L++GL+   L   +  GF P+  P +VR  V+   GF    A+ +VY +E  D  L+GT+E+P+ G H D I+  S  PL+YA +S CF             + RVHQF K+E FV+C P ++++ H+ L+  + ++ + + + ++ +D+A  DLGA A RKFD EAW+P  G Y E++
Sbjct:  111 PAGGEDDYAVLEVVGEPRAIDNP-KDHLELGESLGLIDMARGAKVAGSRFYFLTGQGALLQLGLLQLALRLAVDNGFIPMIPPVLVRPEVMAGTGFLGAHAD-EVYRLEADDLYLVGTSEVPMAGYHADEIVDLSEGPLRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFVYCTPADAEAEHQRLLAWQREMLAQIEVPYRVIDVAAGDLGASAARKFDCEAWVPTQGTYRELT 346          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_COREF7.192e-4837.39Seryl-tRNA synthetase OS=Corynebacterium efficiens... [more]
SYSM_BOVIN1.602e-4739.51Seryl-tRNA synthetase, mitochondrial OS=Bos taurus... [more]
SYS_STRCO1.038e-4639.42Seryl-tRNA synthetase OS=Streptomyces coelicolor G... [more]
SYS_CORGL1.038e-4635.71Seryl-tRNA synthetase OS=Corynebacterium glutamicu... [more]
SYS_KOCRD1.771e-4639.42Seryl-tRNA synthetase OS=Kocuria rhizophila (strai... [more]
SYS_ACIC12.313e-4639.08Seryl-tRNA synthetase OS=Acidothermus cellulolytic... [more]
SYS_THEFY5.154e-4636.97Seryl-tRNA synthetase OS=Thermobifida fusca (strai... [more]
SYS_CORDI6.731e-4637.66Seryl-tRNA synthetase OS=Corynebacterium diphtheri... [more]
SYS_MYCS23.341e-4536.55Seryl-tRNA synthetase OS=Mycobacterium smegmatis G... [more]
SYS_MYCMM3.341e-4537.39Seryl-tRNA synthetase OS=Mycobacterium marinum (st... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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