FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLAMS (Seryl-tRNA synthetase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=serS PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.341e-45
Identity = 88/238 (36.97%), Postives = 141/238 (59.24%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   + + VG  + F+F  +DH ++G+ LD  D    A+VSG++F++LK     LE+ L+N+ L+  ++ G  PL TP +V+  ++   GF    A+ +VY ++  D  L GT+E+ + G H D IL  +  P++YA +S C+             + RVHQF KLEMF +  P ++++ HE L+ ++E +   LGL ++ +D A  DLG+ A RK+DVEAW+P  G Y E++
Sbjct:  111 PAGGEDDWALLREVGEKAAFDFEPRDHLEIGEILDAIDMGRGAKVSGARFHFLKGIGARLEIALMNFGLARALEAGLVPLITPTLVKPEIMAGTGFLGAHAD-EVYHLDDDDLYLTGTSEVALAGYHADEILDLAAGPIRYAGWSTCYRKEAGSYGKDTRGIIRVHQFQKLEMFSYVDPADAEAEHERLLAMQERMMQDLGLAYRVIDTAAGDLGSSAARKYDVEAWIPTQGAYRELT 347          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCUA (Seryl-tRNA synthetase OS=Mycobacterium ulcerans (strain Agy99) GN=serS PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.698e-45
Identity = 89/238 (37.39%), Postives = 140/238 (58.82%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   +   VG P   + P KDH +LG++L + D    A+V+GS+FY+L  +  +L++GL+   L   +  GF P+  P +VR  V+   GF    A+ +VY +E  D  L+GT+E+P+ G H D I+  S  PL+YA +S CF             + RVHQF K+E FV+C P ++++ H+ L+  + ++ + + + ++ +D+A  DLGA A RKFD EAW+P  G Y E++
Sbjct:  111 PAGGEDDYAVLDVVGEPRALDNP-KDHLELGESLGLIDMARGAKVAGSRFYFLTGQGALLQLGLLQLALRLAVDNGFIPMIPPVLVRPEVMAGTGFLGAHAD-EVYRLEADDLYLVGTSEVPMAGYHADEIVDLSEGPLRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFVYCAPADAEAEHQRLLAWQREMLAQIEVPYRVIDVAAGDLGASAARKFDCEAWVPTQGTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ARTS2 (Seryl-tRNA synthetase OS=Arthrobacter sp. (strain FB24) GN=serS PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.720e-45
Identity = 91/239 (38.08%), Postives = 138/239 (57.74%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF-NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  I+ KTVG P  F +F  KDH ++G+ +   D +  A+VSGS+FY+L+     LEM L+   + + I  GF P+ TP +VR   ++  GF  +  + ++Y +   D  L+GT+E+ + G H D IL  S  P++YA  S C+             + RVHQF+K+EMF++   EE+ + HE L+  EE++ +   L ++ +D A  DLG  A RKFD EAW+P  G Y E++
Sbjct:  111 PEGGEDDYIVVKTVGEPREFPDFEPKDHLEIGELIGAIDMERGAKVSGSRFYFLRGVGARLEMALLQMAMEQAIDAGFIPMITPTLVRPETMQGTGFDVKH-DAEIYRLAEDDLYLVGTSEVALAGYHADEILDLSAGPIRYAGQSSCYRREAGSHGKDTRGIIRVHQFNKVEMFIYTTVEEAAAEHERLLAWEEEMLAKCELPYRVIDTAAGDLGNSAARKFDCEAWVPTQGAYRELT 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CORK4 (Seryl-tRNA synthetase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=serS PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.269e-44
Identity = 84/238 (35.29%), Postives = 145/238 (60.92%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGE+  ++ + VG P  F+F  KDH +LG++L I D +  A+VSGS+FY+LK    +L++G++     + ++ GF  + TP IV    +   GF  + A+ ++Y ++  +Q L+GT+E+ + G H   I+  S  P +YA +S CF             + RVHQF K+EMF +C+PE++ + H++L+ +E ++ +++ + ++ +D+A  DLG+ A RKFD EAW+P    Y E++
Sbjct:  114 PAGGEEDFVVVEKVGTPPQFDFEPKDHLELGESLGIIDMERGAKVSGSRFYFLKGAGALLQLGMLQLAAQKAVQHGFELMITPVIVNPESMSGTGFLGQHAD-EIYYLQEDNQYLVGTSEVALAGYHSKEIIDLSAGPKRYAGWSSCFRREAGSYGKDTRGILRVHQFDKVEMFSYCKPEDAAAEHQKLLSMEREMLAAVEVPYRIIDVAGGDLGSSAARKFDTEAWVPTQNTYRELT 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LEIXX (Seryl-tRNA synthetase OS=Leifsonia xyli subsp. xyli GN=serS PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.658e-44
Identity = 93/238 (39.08%), Postives = 139/238 (58.40%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   + K VG    F F  +DH  LG+ L   D    A+VSG++F +L+     LE+ L+N  L + +  GF PL TP +V+  V++  GF    ++ +VY +E  D  L GT+E+ + G H D IL  +  PL+YA +S C+             + RVHQF+KLEMFV+  PE +++ H  L+  +E++  +LGL ++ +D A  DLG+ A RK+DVEAW+P  GRY E++
Sbjct:  111 PSGGEDDYAVLKEVGGIPAFGFEPRDHLALGELLGAIDMARGAKVSGARFSFLRGLGARLEIALMNLALDKALANGFVPLITPTLVKPEVMQGTGFLGEHSD-EVYHLETDDLYLTGTSEVALAGYHADEILDVTE-PLRYAGWSTCYRREAGSAGKDTRGIIRVHQFTKLEMFVYTLPEHAEAEHARLLAWQEEMMQALGLSYRVIDTAAGDLGSSAARKYDVEAWIPTQGRYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCA1 (Seryl-tRNA synthetase OS=Mycobacterium avium (strain 104) GN=serS PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.165e-44
Identity = 89/238 (37.39%), Postives = 139/238 (58.40%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   +   VG P+    P +DH +LG++L + D    A+VSGS+FY+L  +  +L++GL+   L   ++ GF P+  P +VR  V+   GF    A  +VY IE  D  L+GT+E+P+ G H D IL  S  PL+YA +S CF             + RVHQF K+E FV+C P ++++ H+ L+  + ++ + + + ++ +D+A  DLG+ A RKFD EAW+P    Y E++
Sbjct:  111 PAGGEDDFAVLDVVGEPTALENP-RDHLELGESLGLIDMARGAKVSGSRFYFLTGKGALLQLGLLQLALRLAVENGFVPMIPPVLVRPEVMAGTGFLGAHAE-EVYRIEADDLYLVGTSEVPLAGYHADEILDLSAGPLRYAGWSSCFRREAGSYGKDTRGVIRVHQFDKVEGFVYCTPADAEAEHQRLLGWQREMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWVPTQQTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCTU (Seryl-tRNA synthetase OS=Mycobacterium tuberculosis GN=serS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 91/238 (38.24%), Postives = 134/238 (56.30%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   +   VG PS    P KDH +LG++L + D    A+VSGS+FY+L     +L++GL+   L   +  GF P   P +VR  V+   GF    A  +VY +EG    L+GT+E+P+ G H   IL  S  PL+YA +S CF             + RVHQF K+E FV+C P +++  HE L+  +  + + + + ++ +D+A  DLG+ A RKFD EAW+P  G Y E++
Sbjct:  111 PAGGEDDYAVLDVVGEPSYLENP-KDHLELGESLGLIDMQRGAKVSGSRFYFLTGRGALLQLGLLQLALKLAVDNGFVPTIPPVLVRPEVMVGTGFLGAHAE-EVYRVEGDGLYLVGTSEVPLAGYHSGEILDLSRGPLRYAGWSSCFRREAGSHGKDTRGIIRVHQFDKVEGFVYCTPADAEHEHERLLGWQRQMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWIPTQGAYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCTA (Seryl-tRNA synthetase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=serS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 91/238 (38.24%), Postives = 134/238 (56.30%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   +   VG PS    P KDH +LG++L + D    A+VSGS+FY+L     +L++GL+   L   +  GF P   P +VR  V+   GF    A  +VY +EG    L+GT+E+P+ G H   IL  S  PL+YA +S CF             + RVHQF K+E FV+C P +++  HE L+  +  + + + + ++ +D+A  DLG+ A RKFD EAW+P  G Y E++
Sbjct:  111 PAGGEDDYAVLDVVGEPSYLENP-KDHLELGESLGLIDMQRGAKVSGSRFYFLTGRGALLQLGLLQLALKLAVDNGFVPTIPPVLVRPEVMVGTGFLGAHAE-EVYRVEGDGLYLVGTSEVPLAGYHSGEILDLSRGPLRYAGWSSCFRREAGSHGKDTRGIIRVHQFDKVEGFVYCTPADAEHEHERLLGWQRQMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWIPTQGAYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCPA (Seryl-tRNA synthetase OS=Mycobacterium paratuberculosis GN=serS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 89/238 (37.39%), Postives = 138/238 (57.98%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   +   VG P+    P +DH +LG+ L + D    A+VSGS+FY+L  +  +L++GL+   L   ++ GF P+  P +VR  V+   GF    A  +VY IE  D  L+GT+E+P+ G H D IL  S  PL+YA +S CF             + RVHQF K+E FV+C P ++++ H+ L+  + ++ + + + ++ +D+A  DLG+ A RKFD EAW+P    Y E++
Sbjct:  111 PAGGEDDFAVLDVVGEPTALENP-RDHLELGETLGLIDMARGAKVSGSRFYFLTGKGALLQLGLLQLALRLAVENGFVPMIPPVLVRPEVMAGTGFLGAHAE-EVYRIEADDLYLVGTSEVPLAGYHADEILDLSAGPLRYAGWSSCFRREAGSYGKDTRGVIRVHQFDKVEGFVYCTPADAEAEHQRLLGWQREMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWVPTQQTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCBT (Seryl-tRNA synthetase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=serS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 91/238 (38.24%), Postives = 134/238 (56.30%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   +   VG PS    P KDH +LG++L + D    A+VSGS+FY+L     +L++GL+   L   +  GF P   P +VR  V+   GF    A  +VY +EG    L+GT+E+P+ G H   IL  S  PL+YA +S CF             + RVHQF K+E FV+C P +++  HE L+  +  + + + + ++ +D+A  DLG+ A RKFD EAW+P  G Y E++
Sbjct:  111 PAGGEDDYAVLDVVGEPSYLENP-KDHLELGESLGLIDMQRGAKVSGSRFYFLTGRGALLQLGLLQLALKLAVDNGFVPTIPPVLVRPEVMVGTGFLGAHAE-EVYRVEGDGLYLVGTSEVPLAGYHSGEILDLSRGPLRYAGWSSCFRREAGSHGKDTRGIIRVHQFDKVEGFVYCTPADAEHEHERLLGWQRQMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWIPTQGAYRELT 346          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_CLAMS3.341e-4536.97Seryl-tRNA synthetase OS=Clavibacter michiganensis... [more]
SYS_MYCUA5.698e-4537.39Seryl-tRNA synthetase OS=Mycobacterium ulcerans (s... [more]
SYS_ARTS29.720e-4538.08Seryl-tRNA synthetase OS=Arthrobacter sp. (strain ... [more]
SYS_CORK41.269e-4435.29Seryl-tRNA synthetase OS=Corynebacterium kroppenst... [more]
SYS_LEIXX1.658e-4439.08Seryl-tRNA synthetase OS=Leifsonia xyli subsp. xyl... [more]
SYS_MYCA12.165e-4437.39Seryl-tRNA synthetase OS=Mycobacterium avium (stra... [more]
SYS_MYCTU2.828e-4438.24Seryl-tRNA synthetase OS=Mycobacterium tuberculosi... [more]
SYS_MYCTA2.828e-4438.24Seryl-tRNA synthetase OS=Mycobacterium tuberculosi... [more]
SYS_MYCPA2.828e-4437.39Seryl-tRNA synthetase OS=Mycobacterium paratubercu... [more]
SYS_MYCBT2.828e-4438.24Seryl-tRNA synthetase OS=Mycobacterium bovis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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