FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCBP (Seryl-tRNA synthetase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=serS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 91/238 (38.24%), Postives = 134/238 (56.30%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   +   VG PS    P KDH +LG++L + D    A+VSGS+FY+L     +L++GL+   L   +  GF P   P +VR  V+   GF    A  +VY +EG    L+GT+E+P+ G H   IL  S  PL+YA +S CF             + RVHQF K+E FV+C P +++  HE L+  +  + + + + ++ +D+A  DLG+ A RKFD EAW+P  G Y E++
Sbjct:  111 PAGGEDDYAVLDVVGEPSYLENP-KDHLELGESLGLIDMQRGAKVSGSRFYFLTGRGALLQLGLLQLALKLAVDNGFVPTIPPVLVRPEVMVGTGFLGAHAE-EVYRVEGDGLYLVGTSEVPLAGYHSGEILDLSRGPLRYAGWSSCFRREAGSHGKDTRGIIRVHQFDKVEGFVYCTPADAEHEHERLLGWQRQMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWIPTQGAYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCBO (Seryl-tRNA synthetase OS=Mycobacterium bovis GN=serS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 91/238 (38.24%), Postives = 134/238 (56.30%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   +   VG PS    P KDH +LG++L + D    A+VSGS+FY+L     +L++GL+   L   +  GF P   P +VR  V+   GF    A  +VY +EG    L+GT+E+P+ G H   IL  S  PL+YA +S CF             + RVHQF K+E FV+C P +++  HE L+  +  + + + + ++ +D+A  DLG+ A RKFD EAW+P  G Y E++
Sbjct:  111 PAGGEDDYAVLDVVGEPSYLENP-KDHLELGESLGLIDMQRGAKVSGSRFYFLTGRGALLQLGLLQLALKLAVDNGFVPTIPPVLVRPEVMVGTGFLGAHAE-EVYRVEGDGLYLVGTSEVPLAGYHSGEILDLSRGPLRYAGWSSCFRREAGSHGKDTRGIIRVHQFDKVEGFVYCTPADAEHEHERLLGWQRQMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWIPTQGAYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ARTAT (Seryl-tRNA synthetase OS=Arthrobacter aurescens (strain TC1) GN=serS PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.828e-44
Identity = 89/239 (37.24%), Postives = 137/239 (57.32%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF-NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ KTVG P  F +F  KDH ++G+ +   D +  A+VSGS+FY+L+     LEM L+   + + I  GF P+ TP +VR   ++  GF  +  + ++Y +   D  L+GT+E+ + G H D IL  S  P++YA  S C+             + RVHQF+K+EMF++   EE+ + HE L+  EE++ +   L ++ +D A  DLG  A RKFD EAW+P    Y E++
Sbjct:  111 PEGGEDDYVVLKTVGTPREFTDFEPKDHLEIGELIGAIDMERGAKVSGSRFYFLRGVGARLEMALLQMAMEQAIDAGFVPMITPTLVRPETMQGTGFDVKH-DAEIYRLAEDDLYLVGTSEVALAGYHADEILDLSAGPIRYAGQSSCYRREAGSHGKDTRGIIRVHQFNKVEMFIYTTVEEAAAEHERLLAWEEEMLAKCELPYRVIDTAAGDLGMSAARKFDCEAWVPTQNAYRELT 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ARTCA (Seryl-tRNA synthetase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=serS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.693e-44
Identity = 88/239 (36.82%), Postives = 139/239 (58.16%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF-NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ KTVG P  F +F  KDH ++G+ +   D +  A+VSGS+FY+L+     LEM L+   + + I+ GF P+ TP +VR   ++  GF  +  + ++Y +   D  L+GT+E+ + G H D IL  S  P++YA  S C+             + RVHQF+K+EMF++   EE+ + H+ L+  EE++ +   L ++ +D A  DLG  A RK+D EAW+P  G Y E++
Sbjct:  111 PEGGEDDYVVVKTVGTPREFPDFEPKDHLEIGELIGAIDMERGAKVSGSRFYFLRGVGARLEMALLQMAMEQAIEAGFIPMITPTLVRPETMQGTGFDVKH-DAEIYRLAEDDLYLVGTSEVALAGYHADEILDFSAGPIRYAGQSSCYRREAGSHGKDTRGIIRVHQFNKVEMFIYTTVEEAAAEHQRLLAWEEEMLAKCELPYRVIDTAAGDLGNSAARKYDCEAWVPTQGAYRELT 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CLAM3 (Seryl-tRNA synthetase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=serS PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.824e-44
Identity = 88/238 (36.97%), Postives = 139/238 (58.40%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED   + + VG    F+F  +DH ++G+ LD  D    A+VSG++F+YLK     LE+ L+N+ L+  ++ G  PL TP +V+  ++   GF    A+ +VY ++  D  L GT+E+ + G H D IL  +  P++YA +S C+             + RVHQF KLEMF +  P ++++ HE L+ ++E +   LGL ++ +D A  DLG+ A RK+DVEAW+P    Y E++
Sbjct:  111 PAGGEDDWALVREVGAKPSFDFAPRDHLEIGEILDAIDMGRGAKVSGARFHYLKGIGARLEIALMNFGLARALEAGLVPLITPTLVKPEIMAGTGFLGAHAD-EVYHLDDDDLYLTGTSEVALAGYHADEILDLAQGPIRYAGWSTCYRKEAGSYGKDTRGIIRVHQFQKLEMFSYVDPADAEAEHERLLAMQERMMQDLGLSYRVIDTAAGDLGSSAARKYDVEAWIPTQDAYRELT 347          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHOOB (Seryl-tRNA synthetase OS=Rhodococcus opacus (strain B4) GN=serS PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.300e-44
Identity = 87/239 (36.40%), Postives = 142/239 (59.41%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT-QVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  I  +TVG    F+F  KDH +LG++L + D +  A+VSG++FY+L     ML++G++     + +  GF  +  P +VR  ++   GF   GA++ ++Y +   D  L+GT+E+P+ G H   IL  +  P +YA +S CF             + RVHQF K+EMF +C+PE++D+ H+ L+  E D+ +++ + ++ +D+A  DLG+ A RKFD EAW+P    Y E++
Sbjct:  111 PAGGEDDFITLETVGEIPAFDFEPKDHLELGESLGLIDMERGAKVSGARFYFLTGFGAMLQLGMLQLAAQKAMANGFQMMIPPVLVRPEIMAGTGFL--GAHSDEIYHLADDDLYLVGTSEVPLAGYHSGEILDLADGPKRYAGWSTCFRREAGSYGKDTRGIIRVHQFDKVEMFTYCKPEDADAEHQRLLAWERDMLAAIDVPYRVIDVAGGDLGSSAARKFDCEAWVPTQQAYRELT 347          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHOSR (Seryl-tRNA synthetase OS=Rhodococcus sp. (strain RHA1) GN=serS PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.075e-43
Identity = 85/238 (35.71%), Postives = 141/238 (59.24%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  +  +TVG+   F+F  KDH +LG++L + D +  A+VSG++FY+L     ML++G++     + +  GF  +  P +VR  ++   GF    A+ +VY +   D  L+GT+E+P+ G H   IL  +  P +YA +S CF             + RVHQF K+EMF +C+PE++D+ H+ L+  E ++ +++ + ++ +D+A  DLG+ A RKFD EAW+P    Y E++
Sbjct:  111 PAGGEDDFVTLETVGDIPAFDFEPKDHLELGESLGLIDMERGAKVSGARFYFLTGFGAMLQLGMLQLAAQKAMANGFQMMIPPVLVRPEIMAGTGFLGAHAD-EVYHLADDDLYLVGTSEVPLAGYHSGEILDLADGPKRYAGWSTCFRREAGSYGKDTRGIIRVHQFDKVEMFTYCKPEDADAEHQRLLAWEREMLAAIDVPYRVIDVAGGDLGSSAARKFDCEAWVPTQQAYRELT 347          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCSS (Seryl-tRNA synthetase OS=Mycobacterium sp. (strain MCS) GN=serS PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.075e-43
Identity = 86/238 (36.13%), Postives = 139/238 (58.40%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGEDC  +   VG P   + P KDH +LG+AL + D +  A+V+GS+FY+L     +L++GL+   +      GFT +  P +VR  V+   GF    A+ +VY +E  D  L+GT+E+P+ G H D I+  S  P +YA +S CF             + RVHQF K+E F++C+PE++ + H+ L+  + ++ + + + ++ +D+A  DLG+ A RK+D EAW+P    Y E++
Sbjct:  111 PAGGEDCFAVLDVVGEPRAIDDP-KDHLELGEALGLIDMERGAKVAGSRFYFLTGRGALLQLGLMQLAVRLATDNGFTLVIPPVLVRPEVMAGTGFLGAHAD-EVYRLESDDMYLVGTSEVPLAGYHADEIIDLSAGPRRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFIYCKPEDAAAEHDRLLGWQREMLALIEVPYRVIDVAAGDLGSSAARKYDCEAWVPTQQTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCSK (Seryl-tRNA synthetase OS=Mycobacterium sp. (strain KMS) GN=serS PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.075e-43
Identity = 86/238 (36.13%), Postives = 139/238 (58.40%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGEDC  +   VG P   + P KDH +LG+AL + D +  A+V+GS+FY+L     +L++GL+   +      GFT +  P +VR  V+   GF    A+ +VY +E  D  L+GT+E+P+ G H D I+  S  P +YA +S CF             + RVHQF K+E F++C+PE++ + H+ L+  + ++ + + + ++ +D+A  DLG+ A RK+D EAW+P    Y E++
Sbjct:  111 PAGGEDCFAVLDVVGEPRAIDDP-KDHLELGEALGLIDMERGAKVAGSRFYFLTGRGALLQLGLMQLAVRLATDNGFTLVIPPVLVRPEVMAGTGFLGAHAD-EVYRLESDDMYLVGTSEVPLAGYHADEIIDLSAGPRRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFIYCKPEDAAAEHDRLLGWQREMLALIEVPYRVIDVAAGDLGSSAARKYDCEAWVPTQQTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCSJ (Seryl-tRNA synthetase OS=Mycobacterium sp. (strain JLS) GN=serS PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.075e-43
Identity = 86/238 (36.13%), Postives = 139/238 (58.40%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGEDC  +   VG P   + P KDH +LG+AL + D +  A+V+GS+FY+L     +L++GL+   +      GFT +  P +VR  V+   GF    A+ +VY +E  D  L+GT+E+P+ G H D I+  S  P +YA +S CF             + RVHQF K+E F++C+PE++ + H+ L+  + ++ + + + ++ +D+A  DLG+ A RK+D EAW+P    Y E++
Sbjct:  111 PAGGEDCFAVLDVVGEPRAIDDP-KDHLELGEALGLIDMERGAKVAGSRFYFLTGRGALLQLGLMQLAVRLATDNGFTLVIPPVLVRPEVMAGTGFLGAHAD-EVYRLESDDMYLVGTSEVPLAGYHADEIIDLSAGPRRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFIYCKPEDAAAEHDRLLGWQREMLALIEVPYRVIDVAAGDLGSSAARKYDCEAWVPTQQTYRELT 346          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_MYCBP2.828e-4438.24Seryl-tRNA synthetase OS=Mycobacterium bovis (stra... [more]
SYS_MYCBO2.828e-4438.24Seryl-tRNA synthetase OS=Mycobacterium bovis GN=se... [more]
SYS_ARTAT2.828e-4437.24Seryl-tRNA synthetase OS=Arthrobacter aurescens (s... [more]
SYS_ARTCA3.693e-4436.82Seryl-tRNA synthetase OS=Arthrobacter chlorophenol... [more]
SYS_CLAM34.824e-4436.97Seryl-tRNA synthetase OS=Clavibacter michiganensis... [more]
SYS_RHOOB6.300e-4436.40Seryl-tRNA synthetase OS=Rhodococcus opacus (strai... [more]
SYS_RHOSR1.075e-4335.71Seryl-tRNA synthetase OS=Rhodococcus sp. (strain R... [more]
SYS_MYCSS1.075e-4336.13Seryl-tRNA synthetase OS=Mycobacterium sp. (strain... [more]
SYS_MYCSK1.075e-4336.13Seryl-tRNA synthetase OS=Mycobacterium sp. (strain... [more]
SYS_MYCSJ1.075e-4336.13Seryl-tRNA synthetase OS=Mycobacterium sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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