FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PROM3 (Seryl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9303) GN=serS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29
Identity = 67/219 (30.59%), Postives = 116/219 (52.97%), Query Frame = 1
Query:   76 DHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEISVHQLYG 732
            +H+ + + L++F+ + +  ++ S+F  L  +   LE  LIN+ L     +G+  +  P +V ++ +   G  P+ A       E  D  L  TAE+PV  +H D I+    LPL+YAA+S CF             L R+HQF+K+E++ F  P+ S + H ++    E +  +L L ++ +++ T DLG  + R +D+E W+PG G + EIS   + G
Sbjct:  142 EHWSIAERLNLFETERSVRIAQSRFVTLMGQGARLERALINFMLDLHTSKGYREVMPPVLVNTASLTGSGQLPKFAEESFRCAED-DLWLTPTAEVPVTSLHRDEIIPADQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWFVHPDHSQAAHAQITADAEAVLQALELPYRVIELCTGDLGFSSSRTYDLEVWLPGAGAFREISSCSICG 359          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MARMS (Seryl-tRNA synthetase OS=Marinomonas sp. (strain MWYL1) GN=serS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29
Identity = 74/241 (30.71%), Postives = 127/241 (52.70%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE------GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED ++  +  G P  F+F  KDH  LG+A+++ DF+AA +++GS+F  + ++   L   L  + ++      G+T +  P +V +  ++  G  P+     ++ +         D  LI TAE+PV  +  D IL+++ L  K+ A + CF             + R HQF K+E+   C+P+ S+   EEL+   E +   L L ++TV +   DLG  A++ +D+E W+PG G+Y EIS
Sbjct:  119 EDDNVEIRRWGTPKQFDFEPKDHVDLGEAMEMLDFEAAVKITGSRFAVMHSDLARLHRALTQFMINTHADLHGYTEVYVPYLVNAHSLKGTGQLPK-FEADLFKVPVDKDSGNNDLYLIPTAEVPVTNLVRDEILNDADLHKKFVAHTPCFRSEAGSYGRDTRGMIRQHQFEKVELVHVCRPDISEQVLEELVGHAEVILQKLELPYRTVILCGGDLGFSAHKTYDIEVWLPGQGKYREIS 358          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_HERAR (Seryl-tRNA synthetase OS=Herminiimonas arsenicoxydans GN=serS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29
Identity = 80/247 (32.39%), Postives = 126/247 (51.01%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-------EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ ++  + VG P  F+F V+DH  +G AL + DFD AA+++GS+F  +K     L   L  + L +   + G+T   TP IV +  ++  G  P+     ++++       EG    LI TAE+P+  I  D IL+   LP++  A S CF             + R HQF K+EM     PE+S    +E+    E++   LGL ++ + + T D+G  A + +D+E W+P    Y EIS
Sbjct:  112 PVGKDEEDNVELRKVGTPRAFDFEVRDHVDIGAALGL-DFDVAAKITGSRFSVMKGGIARLHRALAQFMLDTHTEEHGYTECYTPYIVNADSLQGTGQLPK-FEADLFAVKKGGQEGEGEALYLIPTAEVPLTNIVRDEILAADALPVRMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVHPEKSYEALDEMCGHAENILKKLGLPYRVITLCTGDMGFGASKTYDLEVWLPAQNTYREIS 356          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CHLL2 (Seryl-tRNA synthetase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=serS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29
Identity = 81/241 (33.61%), Postives = 127/241 (52.70%), Query Frame = 1
Query:    1 PVG--GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG   E+  I+++  G     +FP+K+H +LGK+L I DF+  A+V G+ F     +   LE  LIN+ L +     G+T +  P +V    +   G  P+ A+ QVY+IE      I TAE+PV  +H   +L  + LP+ YAA+S CF               RVHQF+K+EM  F +PE S    EE+ +  E +  +L + ++ + + + D+ A A + +D+E W P   +Y E S
Sbjct:  116 PVGKSAEENVILKEQGGFDYPLDFPLKNHTELGKSLGILDFERGAKVGGAGFPVYTGKGARLERSLINFMLDTHTSGHGYTEIFPPFLVNRESLRGTGQWPKFAD-QVYTIEEDGLYAIPTAEVPVTNLHRGEMLDAADLPIAYAAYSACFRREAGSYGKDTRGFLRVHQFNKVEMVRFTRPEVSYEALEEIRQHAEAILLALKIPYRVLLLCSGDISANATKCYDIEVWSPAEDKYLEAS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CELJU (Seryl-tRNA synthetase OS=Cellvibrio japonicus (strain Ueda107) GN=serS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29
Identity = 74/225 (32.89%), Postives = 113/225 (50.22%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+FP+KDH  LG  L   DFD A +++GS+F  L+     L   L  + L + + + G+  +  P IV    +   G  P+         +  +  LI TAE+P+  I+ D+IL ++ LP+K+ A S CF             + R HQF K+E+    QPE+SD   E L+   E +   L L  +TV +   D+G  A + +D+E W+P   +Y EIS
Sbjct:  127 GMPRSFHFPIKDHVDLGADLGGLDFDTATKITGSRFAVLRGGIARLHRALAQFMLDTHINQHGYEEVNIPFIVNRDSLFGTGQLPKFEEDLFKLTDDREFYLIPTAEVPLTNIYRDAILEDNQLPIKFVAHSPCFRSEAGSYGRDTRGMIRQHQFEKVELVWLVQPEKSDEALEALVAHAEKILHDLELPHRTVVLCGGDIGFSAAKTYDIEVWVPSQNKYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SHEPW (Seryl-tRNA synthetase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=serS PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 79/244 (32.38%), Postives = 120/244 (49.18%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G ++   +  +  G P  FNF VKDH +LG+ L   DF  A +++GS+F  +K +   +   L  + L     + G+T    P +V    +   G  P+      +T+  + EG    LI TAE+P+  I  DSI+ E  LP+   A + CF             L R HQF K+E+    +PE+S    EEL    E +   LGL ++TV + T D+G  A + FD+E W+P    + EIS
Sbjct:  112 PIGADESENVEIRRWGTPKEFNFEVKDHVELGETLGGLDFKNAVKLTGSRFIIMKGQIARMHRALAQFMLDLHTTEHGYTEAYVPLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNIARDSIIDEDDLPVMMTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQLVKPEDSMQALEELTGHAETVLQKLGLPYRTVVLCTGDMGFGAAKTFDIEVWLPAQDTFREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LEPCP (Seryl-tRNA synthetase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=serS PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.356e-29
Identity = 79/245 (32.24%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD-----QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG ++ + +  +  G+P  F+F V+DH  LG  L + DF+ +A++SG++F +LK  A  L   L  + L  +  + G+T   TP IV   V+E  G  P+      +   G D     Q LI T+EI +     + +L+   LP+K  A S CF             L R HQF K+EM     PE+SD+  E ++   E +   LGL ++ + ++T D+G  + + +D+E W+P    Y EIS
Sbjct:  115 PVGADETANLEVRRWGSPREFDFTVRDHVDLGAPLGL-DFETSAKLSGARFSFLKGPAARLHRALAQFMLDVQTQEHGYTECYTPYIVNREVLEGTGQLPKFKEDMFWVSRGGDETQPEQYLISTSEISLTNSVREQVLAADQLPIKLTAHSPCFRSEAGSAGRDTRGLIRQHQFDKVEMVQITTPEQSDAALESMVGHAEAVLQKLGLPYRVLLLSTGDMGFGSAKTYDLEVWVPAQATYREIS 358          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RICPU (Seryl-tRNA synthetase OS=Rickettsia peacockii (strain Rustic) GN=serS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.383e-29
Identity = 71/224 (31.70%), Postives = 117/224 (52.23%), Query Frame = 1
Query:   46 NPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            NP+  N   K HF+LG  L++ DF+  A++SG++F  LK +   LE  LIN+ +    K   F  ++ P +VR + +   G  P+ A     +  G    LI TAE+ +  +  D+I+    LP++Y A++ CF             + R+HQF K+E+     PEES + HE +    E +   L L ++ + + T D+G  A + +D+E W+PG  +Y EI+
Sbjct:  130 NPNALN---KQHFELGIKLNLMDFEQTAKISGTRFVTLKGDLAKLERALINFMIDVHTKEWDFFEISPPVLVRDNAMYNAGQLPKFAEESFATTNGYR--LIPTAEVSLVNMVADTIIPREKLPIRYVAYTPCFRSEAGSSGRDTRGMIRLHQFGKVELVSITTPEESTNEHEYITNASETILQKLNLPYRVMLLCTGDMGFAAKKTYDIEVWLPGQKQYREIA 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RICCN (Seryl-tRNA synthetase OS=Rickettsia conorii GN=serS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.383e-29
Identity = 71/224 (31.70%), Postives = 117/224 (52.23%), Query Frame = 1
Query:   46 NPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            NP+  N   K HF+LG  L++ DF+  A++SG++F  LK +   LE  LIN+ +    K   F  ++ P +VR + +   G  P+ A     +  G    LI TAE+ +  +  D+I+    LP++Y A++ CF             + R+HQF K+E+     PEES + HE +    E +   L L ++ + + T D+G  A + +D+E W+PG  +Y EI+
Sbjct:  130 NPNALN---KQHFELGIKLNLMDFEQTAKISGTRFVTLKGDLAKLERALINFMIDVHTKEWDFFEISPPVLVRDNAMYNAGQLPKFAEESFATTNGYR--LIPTAEVSLVNMVADTIIPREKLPIRYVAYTPCFRSEAGSSGRDTRGMIRLHQFGKVELVSITTPEESTNEHEYITNASETILQKLNLPYRVMLLCTGDMGFAAKKTYDIEVWLPGQKQYREIA 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PROMM (Seryl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=serS PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.383e-29
Identity = 67/219 (30.59%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   76 DHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEISVHQLYG 732
            +H+ + + L +F+ + +  ++ S+F  L  +   LE  LIN+ L     +G+  +  P +V ++ +   G  P+ A       E  D  L  TAE+PV  +H D I+    LPL+YAA+S CF             L R+HQF+K+E++ F  P+ S + H ++    E +  +L L ++ +++ T DLG  + R +D+E W+PG G + EIS   + G
Sbjct:  142 EHWSIAERLKLFETERSVRIAQSRFVTLMGQGARLERALINFMLDLHTSKGYREVMPPVLVNTASLTGSGQLPKFAEESFRCAED-DLWLTPTAEVPVTSLHRDEIIPAEQLPLRYAAYSPCFRREAGSYGRDTRGLIRLHQFNKVELYWFVHPDHSQAAHAQITADAEAVLQALELPYRVIELCTGDLGFSSSRTYDLEVWLPGAGAFREISSCSICG 359          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_PROM32.570e-2930.59Seryl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYS_MARMS2.570e-2930.71Seryl-tRNA synthetase OS=Marinomonas sp. (strain M... [more]
SYS_HERAR2.570e-2932.39Seryl-tRNA synthetase OS=Herminiimonas arsenicoxyd... [more]
SYS_CHLL22.570e-2933.61Seryl-tRNA synthetase OS=Chlorobium limicola (stra... [more]
SYS_CELJU2.570e-2932.89Seryl-tRNA synthetase OS=Cellvibrio japonicus (str... [more]
SYS_SHEPW3.356e-2932.38Seryl-tRNA synthetase OS=Shewanella piezotolerans ... [more]
SYS_LEPCP3.356e-2932.24Seryl-tRNA synthetase OS=Leptothrix cholodnii (str... [more]
SYS_RICPU4.383e-2931.70Seryl-tRNA synthetase OS=Rickettsia peacockii (str... [more]
SYS_RICCN4.383e-2931.70Seryl-tRNA synthetase OS=Rickettsia conorii GN=ser... [more]
SYS_PROMM4.383e-2930.59Seryl-tRNA synthetase OS=Prochlorococcus marinus (... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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