FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LACRJ (Seryl-tRNA synthetase OS=Lactobacillus reuteri (strain JCM 1112) GN=serS PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 73/234 (31.20%), Postives = 115/234 (49.15%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED ++  + VG    F+F  K H+ +G+ L I DFD A +VSG++F Y       LE  + N+ L E +K G+T +  P IV +  +   G  P+     VY + G D  LI TAE+P+   +   ++    LP+   A +  F             L R+HQF+K+EM  + +PE S    E++    E++   L L +  + + T D+   A    D+E WMP   +Y E+S
Sbjct:  118 EDGAVELRKVGKVRDFDFEPKHHWDIGENLGILDFDRAGKVSGARFVYYLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFPK-FKEGVYQVNGEDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAGRDTRGLIRMHQFNKVEMVKYTKPENSWDELEKMTANAENILKKLNLPYHVITLTTGDMSFTASETHDLELWMPAQNKYREVS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LACRD (Seryl-tRNA synthetase OS=Lactobacillus reuteri (strain DSM 20016) GN=serS PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 73/234 (31.20%), Postives = 115/234 (49.15%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED ++  + VG    F+F  K H+ +G+ L I DFD A +VSG++F Y       LE  + N+ L E +K G+T +  P IV +  +   G  P+     VY + G D  LI TAE+P+   +   ++    LP+   A +  F             L R+HQF+K+EM  + +PE S    E++    E++   L L +  + + T D+   A    D+E WMP   +Y E+S
Sbjct:  118 EDGAVELRKVGKVRDFDFEPKHHWDIGENLGILDFDRAGKVSGARFVYYLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFPK-FKEGVYQVNGEDMTLIPTAEVPLTNYYRGEVIPTEELPVYVTALTPSFRSEAGAAGRDTRGLIRMHQFNKVEMVKYTKPENSWDELEKMTANAENILKKLNLPYHVITLTTGDMSFTASETHDLELWMPAQNKYREVS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_LACAC (Seryl-tRNA synthetase OS=Lactobacillus acidophilus GN=serS PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 81/247 (32.79%), Postives = 125/247 (50.61%), Query Frame = 1
Query:    1 PVGGEDC--SIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-------EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G +D     +RK    P+ F+F  K H+ LG  L I D+D A++VSG++F Y      +LE  + N+ L E  K G+T +  P +V  + ++  G  P+  +  VY+I       +  D  LI TAE+P+     + I+ E+ LP+   A S  F             L R+H+F K+EM   C+P+ES    E+L    E L   LGL +  V ++T D    + + +D+E WMP   +Y EIS
Sbjct:  113 PIGPDDSYNEEVRKWE-EPTKFDFKPKAHWDLGTDLGILDWDRASKVSGARFVYYIGAGALLERAVFNFFLDENTKDGYTEIIPPYLVNDASMQGTGQFPK-FHEDVYTIVDNDDPDKPRDLTLIPTAEVPLVNYFRNEIIHENKLPINVTAMSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKICKPDESWDELEKLTHNAEHLLQKLGLPYHVVALSTGDASFTSAKTYDLEVWMPAQDKYREIS 357          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SULNB (Seryl-tRNA synthetase OS=Sulfurovum sp. (strain NBC37-1) GN=serS PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.477e-29
Identity = 69/222 (31.08%), Postives = 117/222 (52.70%), Query Frame = 1
Query:   49 PSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P  F+F  K+H+ L +     DF+   +++ S+F  L+ +A  LE  LIN+ L    +RGF     P +  +++++  G  P+  +  ++ IE  D  LI TAE+P+  ++ D IL+E  LP+    ++ CF             + R HQF K+EM     P+ SD   + +++   D+ ++LGL  + V++   DLG  A +  D+E W+PG  +Y EIS
Sbjct:  130 PRSFDFEPKEHWDLAEKNGWIDFERGVKLAKSRFSVLRGDAARLERALINFFLDTNRERGFEEFCVPFMNNAAMLQGTGQLPKFED-DLFKIEDEDLYLIPTAEVPLTNMYHDEILAEIDLPVLMTGYTPCFRKEAGSAGRDTRGMIRQHQFDKVEMVAIAHPDNSDEVFDMMVQNASDILTALGLPHRVVELCGGDLGFSAAKTIDLEVWLPGQNKYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ROSDO (Seryl-tRNA synthetase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=serS PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.477e-29
Identity = 73/235 (31.06%), Postives = 118/235 (50.21%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED ++  +  G+   F F  K+H+++G      DFD AA+ SG++F  LK     +   L  + + + V   G T + +P +VR   +      P+ A     +  G    L+ T+EIP+       IL  + LP++  A + CF             + R HQF K+EM    +P++S++  + ++R  ED+   LGL ++TV + T D+G  A R FD+EAW+PG   Y EIS
Sbjct:  119 EDDNVEVRRWGHLPDFEFTPKEHYEIGGVAASMDFDTAAKTSGARFVMLKGAVARIHRALSQFMIDTHVDHNGLTEINSPVLVRDDAMYGTDKLPKFAEDSYQTTNG--WWLVSTSEIPLTYTVAGDILDAAALPIRLTAHTLCFRSEAGSAGRDTAGMLRQHQFEKVEMVSITEPDQSEAEQQRMLRCAEDILERLGLPYRTVLLCTGDMGFGARRTFDIEAWLPGQNNYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RICPR (Seryl-tRNA synthetase OS=Rickettsia prowazekii GN=serS PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.477e-29
Identity = 69/215 (32.09%), Postives = 112/215 (52.09%), Query Frame = 1
Query:   73 KDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K HF+LG  L++ DF+  A++SGS+F  LK +   LE  LIN+ +    K   F  ++ P +VR   +   G  P+ +     +  G    LI TAE+ +  I  D+I+    LP++Y A++ CF             + R+HQF K+E+     PEES + HE +    E +   L L ++ + + T D+G  A + +D+E W+PG  +Y EI+
Sbjct:  136 KQHFELGTKLNLMDFEQTAKISGSRFVTLKGDLAKLERALINFMIDIHTKEFDFFEISPPFLVRDRAMYNAGQLPKFSEESFITTNGYR--LIPTAEVSLVNIVADTIIQREKLPMRYVAYTTCFRSEAGSSGRDTRGMIRLHQFGKVELVSITTPEESKNEHEYITNASETILKKLDLPYRVMLLCTGDMGFAAKKTYDIEVWLPGQNQYREIA 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ORITI (Seryl-tRNA synthetase OS=Orientia tsutsugamushi (strain Ikeda) GN=serS PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.477e-29
Identity = 74/234 (31.62%), Postives = 121/234 (51.71%), Query Frame = 1
Query:   16 DCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            D + + K  G      FP K H+++GK L + DF+ A ++SGS+F  LK++   LE  LIN+ +     +  F  ++ P +V+   +   G  P+ A+    +  G    LI TAE+P+  I  ++ L E  LP++  AF+ CF             + R+HQF K+E+F    P+ES+   E L    E +   LGL ++ V + + D+G  A++ +D+E W+P    Y EIS
Sbjct:  119 DMNKVLKECGTIQNIKFP-KHHYEIGKNLGMMDFNTATKMSGSRFVILKHDLAKLERALINFMIDVHTTEFNFFEVSPPCLVKDHAMYNVGQLPKFADASFETTTGYR--LIPTAEVPLTNIFANTTLLEEKLPIRLVAFTPCFRSEVGSAGKDVKGMLRMHQFGKVELFTIATPKESNREFEYLTAAAEKILEKLGLPYRVVLLCSGDIGFAAHKTYDLEVWLPAQNCYREIS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_GEOLS (Seryl-tRNA synthetase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=serS PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.477e-29
Identity = 77/246 (31.30%), Postives = 127/246 (51.63%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEISVHQLYG 732
            PVG  E+ ++I ++ G+     F  K H+ L + LDI DF+ A +++G++F   K     LE  LI++ L     + G+T +  P +V  + +   G  P+     ++ +   +  LI TAE+PV  IH D IL +S LP+ Y A++ CF             L R HQF+K+E+  F  P+ES +  E+L    E +   L L ++ + + + D+G  A + +D+E W+P    Y EIS    +G
Sbjct:  111 PVGKSEEENVIVRSWGSLPEMAFEPKPHWDLAEDLDILDFERATKITGARFCLSKRAGARLERALISFMLDLHSTEHGYTEVLPPFMVNRASMTGTGQLPK-FEEDLFRLMDPEYFLIPTAEVPVTNIHRDEILKKSDLPISYTAYTPCFRREAGSYGKDTRGLIRQHQFNKVELVKFVHPDESQAELEKLTGHAEKVLQLLELPYRVMALCSGDIGFSACKTYDLEVWLPSQNTYREISSCSSFG 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RICFE (Seryl-tRNA synthetase OS=Rickettsia felis GN=serS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 71/224 (31.70%), Postives = 116/224 (51.79%), Query Frame = 1
Query:   46 NPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            NP+  N   K HF+LG  L++ DF+  A++SG++F  LK +   LE  LIN+ +    K   F  ++ P +VR + +   G  P+ A     +  G    LI TAE+ +  I  D+I+    LP++Y A++ CF             + R+HQF K+E+      EES + HE +    E +   L L ++ + + T D+G  A + +D+E W+PG  +Y EI+
Sbjct:  130 NPNALN---KQHFELGTKLNLMDFEQTAKISGARFVTLKGDLAKLERALINFMIDVHTKEFDFFEISPPVLVRDNAMYNAGQLPKFAEESFATTNGYR--LIPTAEVSLVNIVADTIIPREKLPMRYVAYTPCFRSEAGSSGRDTRGMIRLHQFGKVELVSITTTEESKNEHEYITNASETILQKLNLPYRVMLLCTGDMGFAAKKTYDIEVWLPGQKQYREIA 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_JANMA (Seryl-tRNA synthetase OS=Janthinobacterium sp. (strain Marseille) GN=serS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 77/247 (31.17%), Postives = 125/247 (50.61%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL-SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-------EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG ++   +  + VG P  F+F ++DH  +G AL + DFD AA+++GS+F  +K     L   L  + L +   + G+T   TP IV +  ++  G  P+     ++++       EG    LI TAE+P+  I  D I++   LP++  A S CF             + R HQF K+EM     PE+S    +E+    E++   LGL ++ + + T D+G  A + +D+E W+P    Y EIS
Sbjct:  112 PVGTDEAGNVELRKVGTPRSFDFEIRDHVDVGAALGL-DFDVAAKITGSRFSVMKGGIARLHRALAQFMLDTHTAEHGYTECYTPYIVNADSLQGTGQLPK-FEADLFAVKKGGQEGEGEALYLIPTAEVPLTNIVRDEIVAGDALPIRMTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVHPEKSYEALDEMCGHAENILKKLGLPYRVITLCTGDMGFGATKTYDLEVWLPAQNTYREIS 356          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_LACRJ5.725e-2931.20Seryl-tRNA synthetase OS=Lactobacillus reuteri (st... [more]
SYS_LACRD5.725e-2931.20Seryl-tRNA synthetase OS=Lactobacillus reuteri (st... [more]
SYS_LACAC5.725e-2932.79Seryl-tRNA synthetase OS=Lactobacillus acidophilus... [more]
SYS_SULNB7.477e-2931.08Seryl-tRNA synthetase OS=Sulfurovum sp. (strain NB... [more]
SYS_ROSDO7.477e-2931.06Seryl-tRNA synthetase OS=Roseobacter denitrificans... [more]
SYS_RICPR7.477e-2932.09Seryl-tRNA synthetase OS=Rickettsia prowazekii GN=... [more]
SYS_ORITI7.477e-2931.62Seryl-tRNA synthetase OS=Orientia tsutsugamushi (s... [more]
SYS_GEOLS7.477e-2931.30Seryl-tRNA synthetase OS=Geobacter lovleyi (strain... [more]
SYS_RICFE9.765e-2931.70Seryl-tRNA synthetase OS=Rickettsia felis GN=serS ... [more]
SYS_JANMA9.765e-2931.17Seryl-tRNA synthetase OS=Janthinobacterium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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