FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHOPA (Seryl-tRNA synthetase OS=Rhodopseudomonas palustris GN=serS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.842e-27
Identity = 72/232 (31.03%), Postives = 115/232 (49.57%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ----VYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGR---YGEIS 714
            G    ++F  K H+ LG+AL + DF+AAA++SG++F  LK     LE  +  + L       G+T +  P +V+   +      P+    Q         G    LI TAE+ +  +  +SIL E  LP++  A + CF             + R HQF+K+E+     PE+S   HE ++   E++   LGLH++ + + T D+G  + + +D+E WMPG G    Y EIS
Sbjct:  129 GEKPSYSFTPKPHYDLGEALGMMDFEAAAKLSGARFTVLKKGLARLERAIGQFFLDVHTGDHGYTEVNPPLLVKDDAMFGTAQLPKFREDQFAAGAIGSGGEGYWLIPTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSITTPEQSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIEVWMPGQGEGGAYREIS 360          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RHIEC (Seryl-tRNA synthetase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=serS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.842e-27
Identity = 73/240 (30.42%), Postives = 123/240 (51.25%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E  + + + VG    +N   ++HF++G+AL   DF+ AA++SGS+F  L      LE  L  + +     + G+T +++P +VR+  V   G  P+       + +G  + LI TAE+ +  +  + IL +  LPL++ A +  F             + R HQF K E+      E S + HE +    E++   LGLHF+T+ + T D+G  + + +D+E W+PG   + EIS
Sbjct:  114 PVGKDEHDNAVARIVGEKPRWNHTPREHFEIGEALGYMDFERAAKLSGSRFTVLTGPLARLERALGQFMIDLHTREHGYTEVSSPLMVRAEAVFGTGSLPKFEEDLFKTTDG--RYLIPTAEVTLTNLVREEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESSIAEHERMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PHOPR (Seryl-tRNA synthetase OS=Photobacterium profundum GN=serS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.842e-27
Identity = 78/244 (31.97%), Postives = 121/244 (49.59%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G  ED ++     G P  ++F VKDH  LG+     DF +A ++SGS+F  +K +   L   +  + L     + G+T +  P +V +  +   G  P+      +T+  + EG    LI TAE+PV  +  D+I  E+ LPLK  A + CF             L R+HQF K+E+    +PE+S +  EEL    E +   L L ++ V + T D+G  A + +D+E W+P    Y EIS
Sbjct:  114 PAGNDEDENVEISRWGEPKAYDFEVKDHVDLGEMAGGLDFASAVKISGSRFIVMKGQFARLHRAIAQFMLDLHTEEHGYTEMYVPYLVNADSLFGTGQLPKFGEDLFHTKPATEEGVGMSLIPTAEVPVTNMVRDTITDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQITKPEDSMAALEELTGHAEKVLQLLELPYRKVILCTGDMGFGAAKTYDLEVWVPAQNTYREIS 357          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MESSB (Seryl-tRNA synthetase OS=Mesorhizobium sp. (strain BNC1) GN=serS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.842e-27
Identity = 75/240 (31.25%), Postives = 122/240 (50.83%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG ++   +  + VG     N+  K+HF++G+AL + DF+ AA++SG++F  L      LE  L  + L     + G+T +  P +VR   +   G  P+       + +G  + +I TAE+P+  +  + IL    LPL+Y A + CF             + R HQF K+E+      E + + HE +    E++   LGL F+TV + T D+G  A + +D+E W+PG   Y EIS
Sbjct:  119 PVGADENDNVEIRRVGEARQPNW-AKEHFEIGEALGLMDFERAAKLSGARFTVLTGTLARLERALGQFMLDLHTTEHGYTEVQPPLLVRDEALFGTGQLPKFDEDLFRTTDG--RWMIPTAEVPLTNLVREEILDGEKLPLRYTALTPCFRSEAGSAGRDTRGMLRQHQFYKVELVSITDAESALAEHERMTACAEEVLKRLGLPFRTVVLCTGDMGFGAQKTYDIEVWLPGQKTYREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_XANCP (Seryl-tRNA synthetase OS=Xanthomonas campestris pv. campestris GN=serS PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 72/227 (31.72%), Postives = 114/227 (50.22%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD--QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+F VKDH +LG      D + AA++SG++F  L+     L   L  + L   V + G+     P +V +  +   G  P+  +  ++  E  D  + LI T+E+P+  I  D+I+    LPL+  A S CF             + R HQF K+E+   C PE+S++ H+ + R  E +   LGL ++ V + T D+G  A + +D+E W+P    Y EIS
Sbjct:  128 GTPRQFDFAVKDHVELGAPHGWLDGETAAKLSGARFTVLRGPIARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFED-DLFQTEVGDSKRYLIPTSEVPLTNIVRDAIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELVTACSPEDSEAEHQRMTRCAEVVLEKLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQATYREIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_XANCB (Seryl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain B100) GN=serS PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 72/227 (31.72%), Postives = 114/227 (50.22%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD--QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+F VKDH +LG      D + AA++SG++F  L+     L   L  + L   V + G+     P +V +  +   G  P+  +  ++  E  D  + LI T+E+P+  I  D+I+    LPL+  A S CF             + R HQF K+E+   C PE+S++ H+ + R  E +   LGL ++ V + T D+G  A + +D+E W+P    Y EIS
Sbjct:  128 GTPRQFDFAVKDHVELGAPHGWLDGETAAKLSGARFTVLRGPIARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFED-DLFQTEVGDSKRYLIPTSEVPLTNIVRDAIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELVTACSPEDSEAEHQRMTRCAEVVLEKLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQATYREIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_XANC8 (Seryl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=serS PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 72/227 (31.72%), Postives = 114/227 (50.22%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGAD--QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            G P  F+F VKDH +LG      D + AA++SG++F  L+     L   L  + L   V + G+     P +V +  +   G  P+  +  ++  E  D  + LI T+E+P+  I  D+I+    LPL+  A S CF             + R HQF K+E+   C PE+S++ H+ + R  E +   LGL ++ V + T D+G  A + +D+E W+P    Y EIS
Sbjct:  128 GTPRQFDFAVKDHVELGAPHGWLDGETAAKLSGARFTVLRGPIARLHRALAQFMLDLHVGEHGYEETNVPLLVNADSMRGTGQLPKFED-DLFQTEVGDSKRYLIPTSEVPLTNIVRDAIVDAERLPLRMTAHSMCFRAEAGSGGRDTRGMIRQHQFEKVELVTACSPEDSEAEHQRMTRCAEVVLEKLGLPYRKVLLCTGDMGFSAIKTYDLEVWLPSQATYREIS 353          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SHEWM (Seryl-tRNA synthetase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=serS PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 74/244 (30.33%), Postives = 121/244 (49.59%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G ++   +  +  G    + F VKDH +LG+ L   DF +A +++GS+F  +K +   +   L  + L     + G+T    P +V    +   G  P+      +T+  + EG    LI TAE+P+  I  D+I+ E+ LP+K  A + CF             L R HQF K+E+    +PE+S +  + L    E +   LGL ++TV + T D+G  + + FD+E W+P    Y EIS
Sbjct:  112 PIGKDESENVEVRRWGTIKEYGFEVKDHVELGETLGGLDFKSAVKITGSRFIIMKGQIARMHRALAQFMLDLHTTEHGYTETYVPLLVNEDSLMGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNIARDTIIDEAELPVKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVELVQLVKPEDSMAALDALTGHAEKVLEKLGLPYRTVILCTGDMGFGSSKTFDIEVWLPAQNTYREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SHEPA (Seryl-tRNA synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=serS PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 74/244 (30.33%), Postives = 120/244 (49.18%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G ++   +  +  G P  F+F VKDH +LG+ +   DF  A +++GS+F  +K +   +   L  + L     + G+T    P +V    +   G  P+      +T+  + EG    LI TAE+P+  +  D+I+ E  LP+K  A + CF             L R HQF K+EM    +PE+S    E+L    E +   LGL ++T+ + T D+G  + + +D+E W+P    Y EIS
Sbjct:  112 PTGADESENVEVRRWGTPKEFDFAVKDHVELGENIGGLDFKNAVKITGSRFIVMKGQIARMHRALAQFMLDLHTTEHGYTEAYVPLLVNEDSLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPLTNLVRDTIVEEDNLPIKLTAHTPCFRSEAGSYGRDTRGLIRQHQFDKVEMVQLVKPEDSMQALEDLTGHAEVVLQKLGLPYRTMVLCTGDMGFGSAKTYDIEVWLPAQDTYREIS 355          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PROA2 (Seryl-tRNA synthetase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=serS PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 72/235 (30.64%), Postives = 120/235 (51.06%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIK-RGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            +D  I R+ +      +FP+ +H  LGK L I DF+  A+++G+ F     +   LE  LIN+ L +     G+T +  P  V    +   G  P+ A+ QVY +   +   I TAE+P+  +H D IL  S +PL YAA++ CF               RVHQF+K+E+  +  P  S    +E++   E +  +L + ++ + + + D+ A A + +D+E W PG G++ E S
Sbjct:  122 DDNHIYREKLSFDHKLDFPLDNHLDLGKRLGILDFERGAKITGAGFPVYTAKGARLERALINFMLDQHTSVNGYTEVLPPLFVNRESLRGTGQWPKFAD-QVYYMNEDNLYAIPTAEVPLTNMHRDEILDASDIPLAYAAYTPCFRREAGSYGKDTRGFLRVHQFNKVELVRYATPTTSYDALQEILSHAEGILQALKIPYRVLLLCSGDISANATKCYDIEVWAPGEGKFLEAS 355          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_RHOPA1.842e-2731.03Seryl-tRNA synthetase OS=Rhodopseudomonas palustri... [more]
SYS_RHIEC1.842e-2730.42Seryl-tRNA synthetase OS=Rhizobium etli (strain CF... [more]
SYS_PHOPR1.842e-2731.97Seryl-tRNA synthetase OS=Photobacterium profundum ... [more]
SYS_MESSB1.842e-2731.25Seryl-tRNA synthetase OS=Mesorhizobium sp. (strain... [more]
SYS_XANCP2.405e-2731.72Seryl-tRNA synthetase OS=Xanthomonas campestris pv... [more]
SYS_XANCB2.405e-2731.72Seryl-tRNA synthetase OS=Xanthomonas campestris pv... [more]
SYS_XANC82.405e-2731.72Seryl-tRNA synthetase OS=Xanthomonas campestris pv... [more]
SYS_SHEWM2.405e-2730.33Seryl-tRNA synthetase OS=Shewanella woodyi (strain... [more]
SYS_SHEPA2.405e-2730.33Seryl-tRNA synthetase OS=Shewanella pealeana (stra... [more]
SYS_PROA22.405e-2730.64Seryl-tRNA synthetase OS=Prosthecochloris aestuari... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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