FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCA9 (Seryl-tRNA synthetase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=serS PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.404e-43
Identity = 87/238 (36.55%), Postives = 140/238 (58.82%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGE    +R+ VG P     P KDH +LG++L +FD +  A+VSG++FY+L     +L++GL+   +   +  GFT L  P +V+  ++   GF    A+ +VY +E  D  L+GT+E+P+ G H   IL  +  PL+YA +S CF             + RVHQF K+E FV+C+PE++++ HE+++  E  +   + + ++ +D+A  DLG+ A RKFD EAW+P    Y E++
Sbjct:  111 PAGGEQDFALRELVGEPHPIENP-KDHVELGESLGLFDMERGAKVSGARFYFLTGYGALLQLGLLQLAVQTAVANGFTLLIPPVLVKPEIMGGTGFLGAHAD-EVYHLEEDDLYLVGTSEVPIAGYHSGEILDLNNGPLRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEAFVYCKPEDAEAEHEKILGWERQMLGHIEVPYRVIDVAAGDLGSSAARKFDCEAWVPTQRAYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCVP (Seryl-tRNA synthetase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=serS PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.833e-43
Identity = 88/238 (36.97%), Postives = 138/238 (57.98%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++  TVG P+    P KDH +LG++L + D +  A+VSGS+FY+L     +L++GL    +    + GFT +  P +VR  ++   GF    A+ +VY +E  D  L+GT+E+P+ G H   IL  S  P +YA +S CF             + RVHQF K+E FV+C+PEE+++ H+ L+  +  +   + + ++ +D+A  DLG+ A RKFD EAW+P    Y E++
Sbjct:  111 PAGGEDDFVVLDTVGEPTALTDP-KDHLELGESLGLIDMERGAKVSGSRFYFLTGFGALLQLGLFQLAVRTATENGFTLVIPPVLVRPEIMSGTGFLGAHAD-EVYRVEADDLYLVGTSEVPLAGYHSGEILDLSEGPKRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFVYCRPEEAEAEHDRLLGWQRQMLGLIEVPYRVIDIAAGDLGSSAARKFDCEAWVPTQQTYRELT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PYRFU (Seryl-tRNA synthetase OS=Pyrococcus furiosus GN=serS PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.394e-43
Identity = 94/219 (42.92%), Postives = 132/219 (60.27%), Query Frame = 1
Query:   55 VFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            V  +  K H  L + L   DF  AA+VSGS+FYYL NE V+L++ LI + L  +I++GFTP+  P +VR   VE+           +Y +EG D  LI TAE P+ G+H + IL    LPL Y AFS CF             ++RVHQF K+E FV+ +PEES  +HE L+R  E+L+  L + ++ V++ T DLG  A +K+D+EAWMPG GR+ E+
Sbjct:  154 VLEWRPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRR-FVEEGSTTFEDFEDVIYKVEGEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVAFSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHERLVRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGRFREV 371          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PYRAB (Seryl-tRNA synthetase OS=Pyrococcus abyssi GN=serS PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.084e-43
Identity = 94/219 (42.92%), Postives = 131/219 (59.82%), Query Frame = 1
Query:   55 VFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            V  +  K H  L + L   DF  AA+VSGS+FYYL NE V+L++ LI + L E+IK+GFTP+  P +VR   VE+           +Y +EG D  LI TAE P+ G+H + IL    LPL Y   S CF             ++RVHQF K+E FV+ +PEES  +HE +IR  E+L+  L + ++ V++ T DLG  A +K+D+EAWMPG GR+ E+
Sbjct:  154 VLEWRPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDELIKKGFTPVIPPYMVRR-FVEEGSTTFEDFEDVIYKVEGEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGISPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHERIIRNAEELFQKLEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGRFREV 371          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCLE (Seryl-tRNA synthetase OS=Mycobacterium leprae GN=serS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.188e-42
Identity = 88/238 (36.97%), Postives = 139/238 (58.40%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GG+D   +   VG+P   + P KDH +LG+AL + D    A+VSGS+FY+L     +L++GL+   L   ++  F P+  P +VR  V+   GF    A  +VY ++  D  L+GT+E+P+ G H D IL  S+ PL+YA +S CF             + RVHQF K+E FV+C P +++  H+ L+  + ++ + + + ++ +D+A  DLG+ A RKFD EAW+P  G Y E++
Sbjct:  111 PTGGKDDYAVLDIVGDPPPLSNP-KDHLELGEALGLIDMQRGAKVSGSRFYFLTGRGALLQLGLLQLALRLAVENDFIPMIPPVLVRPEVMSGTGFLGAHAE-EVYRVD--DLYLVGTSEVPMAGYHSDEILDLSVGPLRYAGWSSCFRREAGSHGKDTRGIIRVHQFDKVEGFVYCAPTDAEVEHQRLLGWQREMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWVPTQGSYCELT 344          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MYCLB (Seryl-tRNA synthetase OS=Mycobacterium leprae (strain Br4923) GN=serS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.188e-42
Identity = 88/238 (36.97%), Postives = 139/238 (58.40%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GG+D   +   VG+P   + P KDH +LG+AL + D    A+VSGS+FY+L     +L++GL+   L   ++  F P+  P +VR  V+   GF    A  +VY ++  D  L+GT+E+P+ G H D IL  S+ PL+YA +S CF             + RVHQF K+E FV+C P +++  H+ L+  + ++ + + + ++ +D+A  DLG+ A RKFD EAW+P  G Y E++
Sbjct:  111 PTGGKDDYAVLDIVGDPPPLSNP-KDHLELGEALGLIDMQRGAKVSGSRFYFLTGRGALLQLGLLQLALRLAVENDFIPMIPPVLVRPEVMSGTGFLGAHAE-EVYRVD--DLYLVGTSEVPMAGYHSDEILDLSVGPLRYAGWSSCFRREAGSHGKDTRGIIRVHQFDKVEGFVYCAPTDAEVEHQRLLGWQREMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWVPTQGSYCELT 344          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PYRHO (Seryl-tRNA synthetase OS=Pyrococcus horikoshii GN=serS PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.992e-41
Identity = 89/219 (40.64%), Postives = 130/219 (59.36%), Query Frame = 1
Query:   55 VFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            +  +  K H  L + L   DF  AA+VSGS+FYYL NE V+L++ LI + L  +I++GFTP+  P +VR   VE+           +Y +E  D  LI TAE P+ G+H + IL    LPL Y   S CF             ++RVHQF K+E FV+ +PEES  +HE++IR  E+L+  L + ++ V++ T DLG  A +K+D+EAWMPG G++ E+
Sbjct:  154 ILEWKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRR-FVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREV 371          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METB6 (Seryl-tRNA synthetase OS=Methanoregula boonei (strain 6A8) GN=serS PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.477e-40
Identity = 91/239 (38.08%), Postives = 134/239 (56.07%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQV-YSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            P G +D   +  + VG P  F+F +K+H QL       DF+ AA+ SG+ FY+LK   VML++ L  + L  + K+GFTP+  P +++    E  G        +V Y I+G D  LI T+E P+  ++ D I  E  LPL+    S CF             L+RVHQF+K+E FVFC+PE S   HEEL+   E++++ LGL +  V++ T D+G  A +K+D+EAWMP    Y E+
Sbjct:  115 PKGKDDTENVEIRRVGTPRTFDFELKNHGQLAADNGWADFERAAKTSGAGFYFLKGGLVMLDLALQRFALDLLGKKGFTPVIPPFMIKRDSYE--GVTDLDDFEKVMYKIDGDDTYLIATSEHPIAAMYQDEIFEEKDLPLRLCGLSPCFRREIGAHGLDTKGLFRVHQFTKIEQFVFCRPENSWQIHEELLANAEEVFTKLGLPYHVVNICTGDIGTVAAKKYDIEAWMPRENAYKEV 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BIFA0 (Seryl-tRNA synthetase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=serS PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.477e-40
Identity = 86/242 (35.54%), Postives = 139/242 (57.44%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ + VG    F    F  KDH  LG+ +   D     +VSGS+FY+L+ +   L++ ++   + +  + GF    TP +VR  V+   GF    A+ ++Y + E  D  L+GT+E+ + G+H + IL  S  PL+Y  +S C+             + RVHQF K+EMFV+ +PE SD+ H++L+ +EE++ + + + ++ +D A  DLG+ A RKFD EAW+P  GRY E++
Sbjct:  111 PEGGEDDYVVMRKVGQIRDFAAEGFEPKDHLTLGEEVAGIDMKRGVKVSGSRFYFLRGDVARLQIAMLTMAVDQAQEHGFILAITPTLVRPEVMRGTGFLNSHAD-EIYRLREPDDDYLVGTSEVALAGMHENEILDLSDGPLRYCGWSSCYRREAGAAGKDTSGIIRVHQFDKVEMFVYAKPENSDAEHQKLLAMEEEMLAKVEVPYRVIDTAAGDLGSSAARKFDCEAWVPTQGRYRELT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BEUC1 (Seryl-tRNA synthetase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=serS PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.236e-40
Identity = 89/241 (36.93%), Postives = 136/241 (56.43%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ +  G P  F    F  +DH +LG+ L   D +  A+VSG++F+YL      LE+ L+N  + + +  GFTP+ TP +V+  ++   GF    A  +VY IE  D  L+GT+E+ + G H + I+  S  PL+YA +S C+             + RVHQF K+EMF + + E++   HE L+  EE+L   + L ++ +D A  DLG+ A RKFD EAW+P   RY E++
Sbjct:  111 PPGGEDDYVVLRHEGTPRDFAAEGFTPRDHLELGERLRAIDTERGAKVSGARFFYLTGLGARLELALLNAAIDKALTAGFTPVITPTLVKPEIMAGTGFLGAHAE-EVYRIEKDDLYLVGTSEVALAGYHANEIVDLSDGPLRYAGWSACYRREAGSHGKDTRGIIRVHQFHKVEMFSYARLEDAAVEHERLLAWEEELLRLVELPYRVIDTAAGDLGSSAARKFDCEAWLPTQERYLELT 350          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_MYCA91.404e-4336.55Seryl-tRNA synthetase OS=Mycobacterium abscessus (... [more]
SYS_MYCVP1.833e-4336.97Seryl-tRNA synthetase OS=Mycobacterium vanbaalenii... [more]
SYS_PYRFU2.394e-4342.92Seryl-tRNA synthetase OS=Pyrococcus furiosus GN=se... [more]
SYS_PYRAB4.084e-4342.92Seryl-tRNA synthetase OS=Pyrococcus abyssi GN=serS... [more]
SYS_MYCLE1.188e-4236.97Seryl-tRNA synthetase OS=Mycobacterium leprae GN=s... [more]
SYS_MYCLB1.188e-4236.97Seryl-tRNA synthetase OS=Mycobacterium leprae (str... [more]
SYS_PYRHO4.992e-4140.64Seryl-tRNA synthetase OS=Pyrococcus horikoshii GN=... [more]
SYS_METB62.477e-4038.08Seryl-tRNA synthetase OS=Methanoregula boonei (str... [more]
SYS_BIFA02.477e-4035.54Seryl-tRNA synthetase OS=Bifidobacterium animalis ... [more]
SYS_BEUC13.236e-4036.93Seryl-tRNA synthetase OS=Beutenbergia cavernae (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
back to top