FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_UNCMA (Seryl-tRNA synthetase OS=Uncultured methanogenic archaeon RC-I GN=serS PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.226e-40
Identity = 90/242 (37.19%), Postives = 133/242 (54.96%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVR----SSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            PVG +D   +  K  G P   +F +K+H  L       DF+ AA+V+G+ FY+LK   V+L+M L  + +  ++KRGFTP+T P ++       V +   F+       +Y IEG D  LI T+E P+G ++   I  E  LPL+ A  S CF             L+RVHQF K+E FVFC+PE+S   HEE++   E ++  LGL +  V++ T D+G  A +K+D+E WMP    Y E+
Sbjct:  115 PVGKDDTENVEVKRWGEPVQKDFEIKNHGLLAVEHGWADFERAAKVAGAGFYFLKGNMVLLDMALQRFAMDLLVKRGFTPVTPPYMMNRKSYEGVTDLADFEK-----VMYKIEGDDMYLIATSEHPIGAMYQGEIFEEKDLPLRLAGISPCFRREIGAHGLDTKGLFRVHQFHKIEQFVFCKPEDSWKIHEEILANAEAVFQQLGLPYHVVNICTGDIGTVAAKKYDIEVWMPRENTYKEV 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METLZ (Seryl-tRNA synthetase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=serS PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.226e-40
Identity = 86/238 (36.13%), Postives = 132/238 (55.46%), Query Frame = 1
Query:    1 PVGGEDC-SIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            P G +D  +++ K VG P   +F +K+H +L  A    DF+ A + SG+ FY+LK    +L+M L  + L  +I +G+TP+  P ++     E+           +Y IE  D  LI TAE P+  ++ D I  E  LPLK    S CF             L+RVHQF+K+E F++C PE+S   HEEL+   E++++ LGL ++ V++ T D+G  A +K+D+EAWMP    Y E+
Sbjct:  115 PYGKDDTENVVVKKVGTPRSLDFELKNHGELAAANGWADFERATKTSGAGFYFLKGNLALLDMALQRFALDTIIAKGYTPIIPPYMMNRKSYEEVT-DLGDFEKVMYKIEDDDAYLIATAEHPMAAMYQDEIFEEKDLPLKMVGISPCFRREIGAHGLDSRGLFRVHQFTKIEQFIYCMPEKSWEMHEELLANAEEIFTKLGLPYRVVNICTGDIGTVAAKKYDMEAWMPRDNEYREV 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THEGJ (Seryl-tRNA synthetase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=serS PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.606e-39
Identity = 88/217 (40.55%), Postives = 128/217 (58.99%), Query Frame = 1
Query:   79 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT------QVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            H  + + L   D + AA+VSGS+FYYL NE V+L++ LI + L  +I++GFTP+  P +VR  V E       GA T       +Y +EG D  LI TAE P+ G+H + IL    LPL Y   S CF             ++RVHQF K+E FV+ +PEES  +HE++I   E+L+  L + ++ V++ T DLG  A +K+D+EAWM G G++ E+
Sbjct:  162 HVDMLELLRGADLERAAKVSGSRFYYLLNELVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEE-------GATTFEDFEDVIYKVEGEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIANAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMAGQGKFREV 371          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_TROWT (Seryl-tRNA synthetase OS=Tropheryma whipplei (strain Twist) GN=serS PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.097e-39
Identity = 86/238 (36.13%), Postives = 132/238 (55.46%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G ED   + KTVG+   F+F   DH QLG+ LD  D     +VSG++FY+LK     LE+ ++N  L   +K G T L TP +V+  ++   GF  R    +VY +      L GT+E+ + G H D IL  S  P++YA +S C+             + RVHQFSKLEMF +  P++S    E ++ ++E + + L + ++  D+A E+LG  A RK+D+EAW+P    + E++
Sbjct:  111 PYGVEDKCAVMKTVGDIPEFDFEPADHLQLGEQLDAIDVSRGVKVSGTRFYFLKGWGARLELAVMNLALDLALKSGLTLLITPTLVKPEIMLGTGFLGRHEG-EVYRLPSG-YYLTGTSEVAIAGYHSDEILDISSGPIRYAGWSSCYRREAGSHGRDTRGIMRVHQFSKLEMFSYVHPQQSTRELEHIVSMQEKMLNLLEIPYRVSDIAAEELGTSASRKYDLEAWIPSQNTWREVT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_TROW8 (Seryl-tRNA synthetase OS=Tropheryma whipplei (strain TW08/27) GN=serS PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.097e-39
Identity = 86/238 (36.13%), Postives = 132/238 (55.46%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P G ED   + KTVG+   F+F   DH QLG+ LD  D     +VSG++FY+LK     LE+ ++N  L   +K G T L TP +V+  ++   GF  R    +VY +      L GT+E+ + G H D IL  S  P++YA +S C+             + RVHQFSKLEMF +  P++S    E ++ ++E + + L + ++  D+A E+LG  A RK+D+EAW+P    + E++
Sbjct:  111 PYGVEDKCAVMKTVGDIPEFDFEPADHLQLGEQLDAIDVSRGVKVSGTRFYFLKGWGARLELAVMNLALDLALKSGLTLLITPTLVKPEIMLGTGFLGRHEG-EVYRLPSG-YYLTGTSEVAIAGYHSDEILDISSGPIRYAGWSSCYRREAGSHGRDTRGIMRVHQFSKLEMFSYVHPQQSTRELEHIVSMQEKMLNLLEIPYRVSDIAAEELGTSASRKYDLEAWIPSQNTWREVT 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_MICLC (Seryl-tRNA synthetase OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=serS PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.577e-39
Identity = 83/241 (34.44%), Postives = 134/241 (55.60%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ K VG P  F    F  +DH +LG+ L   D +  A+VSG++F +L      LE+ L+   L   ++ GF P+  P +VR   ++  GF     + ++Y +E  D  L+GT+E+ + G H   I+  S  P++YA +S C+             + RVHQF+KLEMF++   E++++ H  L+  EE +  ++ + ++ +D+A  DLG  A RKFD EAW+P  G Y E++
Sbjct:  111 PAGGEDDFVVLKEVGTPRDFAAEGFEPRDHLELGELLGAIDMERGAKVSGARFSFLTGVGARLELALMQLGLDLALENGFVPVIPPTLVRPETMQGTGFDVEH-DDEIYRLERDDLYLVGTSEVALAGFHAGEIMDVSA-PVRYAGWSTCYRREAGSAGKDTRGIIRVHQFNKLEMFIYAAQEDAEAEHARLLAWEERMLGAIEVPYRVIDIAAGDLGLSAARKFDCEAWVPTQGTYRELT 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METST (Seryl-tRNA synthetase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=serS PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.577e-39
Identity = 84/233 (36.05%), Postives = 130/233 (55.79%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            ED + + +T G+   F+F   +H  L   +D  D D A++++GS+FYYLK + + L + LI + L+E+  +G+TPL TP  ++S V E+         T +Y +E  D  LI TAE  +  +H + I+    LPL+Y A S CF             ++RVHQF K+E F++  PE S   HE+L+ + E +Y  LGL ++ V + +  L   A  K+D+EAW PG G Y E+
Sbjct:  117 EDDNEVIRTNGDFPSFDFEPLNHVDLINLIDGADTDTASQIAGSRFYYLKQDILFLNLALIQFALNELKDKGYTPLQTPFFIKSEVAEETSELGEFEET-LYKVENEDLYLIATAEQTLAALHRNEIIDSEDLPLRYCALSTCFRKEAGSHGKDTLGIFRVHQFEKVEQFIYATPENSTLEHEKLLEVTEGIYQKLGLPYQIVAIVSSALNDNAAIKYDLEAWFPGSGTYREL 348          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BIFAA (Seryl-tRNA synthetase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=serS PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.577e-39
Identity = 84/242 (34.71%), Postives = 137/242 (56.61%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ K VG    F    F  KDH  LG+ +   D +   +V GS+FY+L+ +   +++ ++   + +  + GFT   TP +VR  V+   GF    A+ ++Y + E  DQ L+GT+E+ + G+H + IL+    PL+Y  +S C+             + RVHQF K+EMFV+ + E+S   HE L+ +E+++   + + ++ +D A  DLG+ A RKFD EAW+P  GRY E++
Sbjct:  111 PEGGEDDYVVVKKVGQIRDFAAEGFEPKDHLTLGRGVAGIDMERGVKVGGSRFYFLRGQVARMQIAMLTMAVDQAEEHGFTLAITPTLVRPEVMRGTGFLNSHAD-EIYRLREPDDQYLVGTSEVALAGMHENEILNLENGPLRYCGWSSCYRREAGAAGKDTSGIIRVHQFDKVEMFVYAKQEDSYKEHEHLLAMEQEMLGKVEVPYRIIDTAAGDLGSSAARKFDCEAWVPTQGRYRELT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THEON (Seryl-tRNA synthetase OS=Thermococcus onnurineus (strain NA1) GN=serS PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.672e-39
Identity = 87/212 (41.04%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   79 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQV-YSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            H  + + L   D + AA+VSGS+FYYL NE V+L++ LI + L ++I++GF P+  P +VR  V E  G    G    V Y +EG D  LI TAE P+ G+H + IL    LPL Y   S CF             ++RVHQF K+E FV+ +PEES  +HE+LI+  E+++  L + ++ V++ T DLG  A +K+D+EAWM G G++ E+
Sbjct:  162 HVDMLEILRGADIERAAKVSGSRFYYLLNELVILDLALIRFALDKLIEKGFIPVIPPYMVRRYVEE--GVTSFGDFEDVIYKVEGEDLYLIPTAEHPLAGMHANEILEGKDLPLLYVGISPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKLIQNAEEIFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMAGQGKFREV 371          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PYRKO (Seryl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=serS PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.672e-39
Identity = 86/217 (39.63%), Postives = 129/217 (59.45%), Query Frame = 1
Query:   79 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT------QVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            H  + + L   D + AA+VSG++FYYL NE V+L++ LI + L ++I++GFTP+  P +VR  V E       GA T       +Y +EG D  LI TAE P+ G+H + IL    LPL Y   S CF             ++RVHQF K+E FV+ +PEES  +HE +I   E+++ +L + ++ V++ T DLG  A +K+D+EAWM G G++ E+
Sbjct:  162 HVDMLELLRGADLERAAKVSGARFYYLLNELVILDLALIRFALDKLIEKGFTPVIPPYMVRRFVEE-------GATTFDDFEDVIYKVEGEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHERIIANAEEIFQALEIPYRVVNICTGDLGYVAAKKYDIEAWMAGQGKFREV 371          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_UNCMA4.226e-4037.19Seryl-tRNA synthetase OS=Uncultured methanogenic a... [more]
SYS_METLZ4.226e-4036.13Seryl-tRNA synthetase OS=Methanocorpusculum labrea... [more]
SYS_THEGJ1.606e-3940.55Seryl-tRNA synthetase OS=Thermococcus gammatoleran... [more]
SYS_TROWT2.097e-3936.13Seryl-tRNA synthetase OS=Tropheryma whipplei (stra... [more]
SYS_TROW82.097e-3936.13Seryl-tRNA synthetase OS=Tropheryma whipplei (stra... [more]
SYS_MICLC3.577e-3934.44Seryl-tRNA synthetase OS=Micrococcus luteus (strai... [more]
SYS_METST3.577e-3936.05Seryl-tRNA synthetase OS=Methanosphaera stadtmanae... [more]
SYS_BIFAA3.577e-3934.71Seryl-tRNA synthetase OS=Bifidobacterium adolescen... [more]
SYS_THEON4.672e-3941.04Seryl-tRNA synthetase OS=Thermococcus onnurineus (... [more]
SYS_PYRKO4.672e-3939.63Seryl-tRNA synthetase OS=Pyrococcus kodakaraensis ... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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