FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METHJ (Seryl-tRNA synthetase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=serS PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.672e-39
Identity = 84/238 (35.29%), Postives = 131/238 (55.04%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            PVG +D   +  K  G P  F F +K+H QL    D  DF+ A + SG+ FY+LK   V+L++ L  ++L  ++++G+TP+  P ++     E+           +Y IE  D  LI T+E P+  ++ D I  E  LPL+ A  S CF             L+RVHQF K+E FV+C P++S + HEEL    E+++  L + ++ V++ T D+G  A +K+D+EAWMP    Y E+
Sbjct:  115 PVGADDTQNVEVKRYGTPRTFTFELKNHGQLAADNDWADFERATKTSGAGFYFLKGNLVLLDLALQRFSLDILMEKGYTPIIPPYMINRKSYEEVT-DLDDFEKVMYKIEDDDAYLIATSEHPMAAMYQDEIFEEKDLPLRLAGLSPCFRREIGSHGLDTKGLFRVHQFHKVEQFVYCHPDDSWTIHEELRENAEEIFQKLEIPYRVVNICTGDIGTVAAKKYDIEAWMPRENEYREV 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SYMTH (Seryl-tRNA synthetase OS=Symbiobacterium thermophilum GN=serS PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.041e-38
Identity = 86/239 (35.98%), Postives = 131/239 (54.81%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG ++   +  K  G P  F FPVK H+ LG A+D  DF+ AA+V+GS+F ++K     L   L+++ +  + +RG+  +  P I+ ++     G  P+     V+S+ G D  L  TAE+P+  +H D IL E++LPL+Y  +S CF             L R H F K+EM  F +PEES+    E++   E +   L L ++ + M T D+G   Y+K+D+E WMP   RY EIS
Sbjct:  112 PVGPDETGNVEVKRWGEPRQFAFPVKPHWDLGVAMDGLDFERAAKVTGSRFSFIKGGLARLHRALVSFFIDYLTERGYREVLPPVIINTASYYGSGQFPK-FKEDVFSLAGTDYHLASTAEVPLVNMHRDEILDEAVLPLRYVGYSGCFRSEAGAAGRDTRGLIRQHYFEKVEMVQFTRPEESEQALMEIVANAEGMLEQLNLPYRRMLMCTGDMGFGQYKKYDIEVWMPSYERYVEIS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BIFLO (Seryl-tRNA synthetase OS=Bifidobacterium longum GN=serS PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.319e-38
Identity = 84/242 (34.71%), Postives = 135/242 (55.79%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ K VG    F    F  KDH  LG  +   D     +V GS+FY+L+ +   +++ ++   + +  + GFT   TP +VR  V+   GF    A+ ++Y + E  DQ L+GT+E+ + G+H + IL     PL+Y  +S C+             + RVHQF K+EMFV+ + E+S   HE L+ +E+++ + + + ++ +D A  DLG+ A RKFD EAW+P  GRY E++
Sbjct:  111 PEGGEDDYVVVKKVGQIRDFAAEGFEPKDHLTLGTGVAGIDMRRGVKVGGSRFYFLRGQVARMQIAMLTMAVDQAEEHGFTLAITPTLVRPEVMRGTGFLNSHAD-EIYRLREPDDQYLVGTSEVALAGMHENEILDLGNGPLRYCGWSSCYRREAGAAGKDTSGIIRVHQFDKVEMFVYAKQEDSYKEHEHLLAMEQEMLAKVEVPYRIIDTAAGDLGSSAARKFDCEAWVPTQGRYRELT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BIFLI (Seryl-tRNA synthetase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=serS PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.319e-38
Identity = 84/242 (34.71%), Postives = 135/242 (55.79%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ K VG    F    F  KDH  LG  +   D     +V GS+FY+L+ +   +++ ++   + +  + GFT   TP +VR  V+   GF    A+ ++Y + E  DQ L+GT+E+ + G+H + IL     PL+Y  +S C+             + RVHQF K+EMFV+ + E+S   HE L+ +E+++ + + + ++ +D A  DLG+ A RKFD EAW+P  GRY E++
Sbjct:  111 PEGGEDDYVVVKKVGQIRDFAAEGFEPKDHLTLGAGVAGIDMRRGVKVGGSRFYFLRGQVARMQIAMLTMAVDQAEEHGFTLAITPTLVRPEVMRGTGFLNSHAD-EIYRLREPDDQYLVGTSEVALAGMHENEILDLGNGPLRYCGWSSCYRREAGAAGKDTSGIIRVHQFDKVEMFVYAKQEDSYKEHEHLLAMEQEMLAKVEVPYRIIDTAAGDLGSSAARKFDCEAWVPTQGRYRELT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BIFLD (Seryl-tRNA synthetase OS=Bifidobacterium longum (strain DJO10A) GN=serS PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.319e-38
Identity = 84/242 (34.71%), Postives = 135/242 (55.79%), Query Frame = 1
Query:    1 PVGGEDCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P GGED  ++ K VG    F    F  KDH  LG  +   D     +V GS+FY+L+ +   +++ ++   + +  + GFT   TP +VR  V+   GF    A+ ++Y + E  DQ L+GT+E+ + G+H + IL     PL+Y  +S C+             + RVHQF K+EMFV+ + E+S   HE L+ +E+++ + + + ++ +D A  DLG+ A RKFD EAW+P  GRY E++
Sbjct:  111 PEGGEDDYVVVKKVGQIRDFAAEGFEPKDHLTLGTGVAGIDMRRGVKVGGSRFYFLRGQVARMQIAMLTMAVDQAEEHGFTLAITPTLVRPEVMRGTGFLNSHAD-EIYRLREPDDQYLVGTSEVALAGMHENEILDLGNGPLRYCGWSSCYRREAGAAGKDTSGIIRVHQFDKVEMFVYAKQEDSYKEHEHLLAMEQEMLAKVEVPYRIIDTAAGDLGSSAARKFDCEAWVPTQGRYRELT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_ROSS1 (Seryl-tRNA synthetase OS=Roseiflexus sp. (strain RS-1) GN=serS PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.503e-37
Identity = 85/234 (36.32%), Postives = 126/234 (53.85%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            E  +++    G P  F+F  K H++LG+ALDI DF+   ++SGS+FY LK     L+  LI W L    K+G+  + TP +V+   +      P+  +     +E  D  L+ TAE+PV  +H D IL    LPL+Y A++ CF             + R HQF K+EM++F +PE S    E+L    E+    LGL F+T ++ T DLG  A R +D+E W PG G + E+S
Sbjct:  117 ETYNVVIAQEGEPRTFDFTPKPHWELGEALDIIDFERGVKLSGSRFYVLKGPGARLQRALIQWMLDLHGKQGYDEVYTPFVVKEQCMWGARQLPKFRDNLYRDVED-DLWLVPTAEVPVTNLHRDEILDADQLPLRYCAYTPCFRREKMSAGRDVRGIKRGHQFDKVEMYMFVRPETSYDELEKLRADAEETCRLLGLPFRTKELCTGDLGFAATRTYDIEVWAPGQGEWLEVS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THESM (Seryl-tRNA synthetase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=serS PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 81/201 (40.30%), Postives = 125/201 (62.19%), Query Frame = 1
Query:  112 DFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQV-YSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            D + AA+VSG++F+YL NE V+L++ LI + L ++I++GF P+  P +VR  V E  G    G    V Y IEG D  LI T+E P+ G+H + IL    LP+ YA  S CF             ++RVHQF K+E FV+ +PEES  +HE+L++  E+++ +L + ++ V++ T DLG  A +K+D+EAWM   G++ E+
Sbjct:  173 DLERAAKVSGARFFYLLNELVILDLSLIRFALDKLIEKGFIPVIPPYMVRKYVEE--GVTSFGDFEDVIYKIEGEDLYLIPTSEHPLAGMHSNEILDGHNLPILYAGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYARPEESWEWHEKLLQNAEEIFQALEIPYRIVNICTGDLGYAAAKKYDIEAWMSAQGKFREV 371          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_PICTO (Seryl-tRNA synthetase OS=Picrophilus torridus GN=serS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 79/223 (35.43%), Postives = 129/223 (57.85%), Query Frame = 1
Query:   43 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            G+    ++  K H  L   L++ D + A +++G++FY+LKN    LE+ LIN+ +  + +RG+T L  P ++    +          +T +Y IEG D  LI TAE P+  +  D IL E  LP++ +  S CF             ++RVHQF+K+E FVFC+PE+S  + +EL+R  ED+Y SL + ++ V++ + +LG  A +K+D+EAW P  G++ EI
Sbjct:  147 GDYEEIDYRPKSHVDLISELNLADIERAGKIAGARFYFLKNRLFKLELALINYAVDFLSQRGYTVLEPPFMINYKSMSGATDIETFKDT-LYKIEGDDLYLIATAEHPIASMLQDEILMEDELPIRVSGVSPCFRREAGAHGKDTKGIFRVHQFNKIEQFVFCKPEDSWDFFDELVRNSEDIYKSLKIPYRVVNVCSGELGNLAAKKYDIEAWFPAQGKFREI 368          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CAMJJ (Seryl-tRNA synthetase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=serS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 87/239 (36.40%), Postives = 130/239 (54.39%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  K V NPS F+F  K+HF+LG++L+  DF    ++S S+F  LKNE  +L   L+N+ +     RGF  +  P +V  + +   G  P+     +Y ++  D  LI T+EIPV  ++   IL+   LP+K   +S CF             + R HQF K+E+    +PE+SDS   E++    DL SSLGL  + + + T DLG  A +  D+E W+PG  +Y EIS
Sbjct:  109 PVGEDEDENVELKKVLNPSSFDFTPKEHFELGESLNWLDFVRGVKISQSRFCVLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPK-FKEDMYKVDDEDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNKYREIS 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_THEPX (Seryl-tRNA synthetase OS=Thermoanaerobacter sp. (strain X514) GN=serS PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.348e-37
Identity = 87/240 (36.25%), Postives = 133/240 (55.42%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G  D   +  +  G P  F+F  K H+++G+ LDI DF+AAA V+GS+F + K     LE  LIN+ L   + K G+T +  P +V    +   G  P+      + + G D  LI TAE+PV  ++ D+I+    LP+ + A+S CF             L R HQF+K+E+  F +P++S    E++ R  E++  +LGL ++ V + T DLG  A +K+D+E WMP  GRY EIS
Sbjct:  112 PIGDSDEDNVEIRRWGEPRKFDFEPKPHWEIGQELDILDFEAAARVTGSRFTFYKGLGARLERALINFMLDLHIEKHGYTEVFPPFMVHRRSMFGTGQLPK-FEEDAFKVYGTDYFLIPTAEVPVTNMYRDTIIDGDKLPIYHCAYSACFRQEAGSAGRDTRGLIRQHQFNKVELVKFTEPDKSYEELEKMTRDAEEVLQALGLPYRVVVICTGDLGFTASKKYDIEVWMPSYGRYVEIS 350          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_METHJ4.672e-3935.29Seryl-tRNA synthetase OS=Methanospirillum hungatei... [more]
SYS_SYMTH1.041e-3835.98Seryl-tRNA synthetase OS=Symbiobacterium thermophi... [more]
SYS_BIFLO2.319e-3834.71Seryl-tRNA synthetase OS=Bifidobacterium longum GN... [more]
SYS_BIFLI2.319e-3834.71Seryl-tRNA synthetase OS=Bifidobacterium longum su... [more]
SYS_BIFLD2.319e-3834.71Seryl-tRNA synthetase OS=Bifidobacterium longum (s... [more]
SYS_ROSS11.503e-3736.32Seryl-tRNA synthetase OS=Roseiflexus sp. (strain R... [more]
SYS_THESM1.963e-3740.30Seryl-tRNA synthetase OS=Thermococcus sibiricus (s... [more]
SYS_PICTO2.564e-3735.43Seryl-tRNA synthetase OS=Picrophilus torridus GN=s... [more]
SYS_CAMJJ2.564e-3736.40Seryl-tRNA synthetase OS=Campylobacter jejuni subs... [more]
SYS_THEPX3.348e-3736.25Seryl-tRNA synthetase OS=Thermoanaerobacter sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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