FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CAMJ8 (Seryl-tRNA synthetase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=serS PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.702e-36
Identity = 85/239 (35.56%), Postives = 128/239 (53.56%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  K V NP  F+F  K+HF+LG++L+  DF    ++S S+F  LKNE  +L   L+N+ +      GF  +  P +V  + +   G  P+     +Y ++  D  LI T+EIPV  ++   IL+   LP+K   +S CF             + R HQF K+E+    +PE+SDS   E++    DL SSLGL  + + + T DLG  A +  D+E W+PG  +Y EIS
Sbjct:  109 PVGEDEDENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFCVLKNEGALLSRALVNYMIDFNRSHGFEFVNVPFLVNGATMFGTGQLPK-FKEDMYKVDDEDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNKYREIS 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_METMJ (Seryl-tRNA synthetase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=serS PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.835e-36
Identity = 81/237 (34.18%), Postives = 129/237 (54.43%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGE 708
            PVG +D   +  +  G P +  F +++H  L       DF+ AA+++GS FY+LK    +L+M L  + +  +++ G+TP+  P ++  +  E         N  +Y I+G D+ LI T+E P+  ++ D I  E  LPL+ A  S CF             L+RVHQF K+E F++  PE+S   HEEL+   E+++  LGL ++ V + T D+G  A +K+D+E WMP   RY E
Sbjct:  115 PVGKDDSENVEIRRWGEPEIPAFDLENHGALAVEHGWADFERAAKIAGSGFYFLKGRLALLDMALQRFAMDILVEHGYTPIIPPYMMNRAAYEGVTDLADFENV-MYRIDGEDEYLIATSEHPMAAMYCDEIFEEKDLPLRLAGLSPCFRREIGAHGLDTKGLFRVHQFHKVEQFIYATPEQSWDLHEELMANAEEVFQRLGLPYRIVSICTGDIGTVAAKKYDLEVWMPREERYRE 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CAMJD (Seryl-tRNA synthetase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=serS PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.835e-36
Identity = 84/239 (35.15%), Postives = 129/239 (53.97%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ ++  K V NP  F+F  K+HF+LG++L+  DF    ++S S+F  LKNE  +L   L+N+ +     RGF  +  P +V  + +   G  P+     +Y ++  D  LI T+EIP+  ++   IL+   LP+K   +S CF             + R HQF K+E+    +PE+SDS   E++    DL SSLGL  + + + T DLG  A +  D+E W+PG  +Y EIS
Sbjct:  109 PVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFCVLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPK-FKEDMYKVDDEDLYLISTSEIPITNLYSGEILTSETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQFEKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPGQNKYREIS 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BACCZ (Seryl-tRNA synthetase OS=Bacillus cereus (strain ZK / E33L) GN=serS PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.835e-36
Identity = 88/240 (36.67%), Postives = 128/240 (53.33%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED +++ +T G    FNF  K H+ L   L I DF+ A +V+GS+F + K     LE  LI++ L     + G+  +  P +V  + +   G  P+      + IE  D  LI TAE+PV  +H D IL++  LP++YAAFS CF             L R HQF+K+E+  F +PE+S    E+L    E +   L L ++ + M T DLG  A +K+D+E W+P  G Y EIS
Sbjct:  113 PVGETEDDNVVARTWGEVKEFNFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPK-FEEDAFRIESEDYFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIEVWIPSYGTYREIS 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CHLAD (Seryl-tRNA synthetase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=serS PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.247e-36
Identity = 77/217 (35.48%), Postives = 127/217 (58.53%), Query Frame = 1
Query:   64 FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            FP + H++LG+AL I DF+   +++GS+FY ++     L+  +I W L   +++G+  + TP +V+ SV+   G  P+  +  +Y  E +   L+ TAE+P+ G++ D IL  S LP+ +AA++ CF             + R HQF K+EM++F +PEES    E+L R  E+    LGL F+T  + T DLG  + + +D+E W PG+G + E+S
Sbjct:  134 FPARPHWELGEALGILDFERGVKLAGSRFYVMRGAGARLQRAVIQWLLDLHLRQGYQEIYTPFVVKESVLWASGQLPKFRDN-LYRDEESGLWLVPTAEVPLTGLYADEILEASQLPIYHAAYTPCFRKEQLSAGRDVRGIKRGHQFDKVEMYMFVKPEESYQALEKLRRDAEECARLLGLPFRTKLLCTADLGFGSTKTYDIEVWAPGVGEWLEVS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_CAMLR (Seryl-tRNA synthetase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=serS PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 81/234 (34.62%), Postives = 126/234 (53.85%), Query Frame = 1
Query:   13 EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            ED ++  K V  P  F+F +K+H  LG+ L+  DF    ++S S+F  LKNE  +L   L+N+ +     RGF  +  P +V  + +   G  P+  +  +Y +E  D  LI T+EIPV  ++ + IL++  LPLK   +S CF             + R HQF K+E+   C+P++S+   EE++    DL SSLGL  + + + T DLG  A +  D+E W+P   +Y EIS
Sbjct:  114 EDENVELKKVLTPPSFDFEIKEHHDLGEKLNWLDFTRGVKISQSRFCVLKNEGALLSRALVNYMIDFNRSRGFELVNVPFLVNGATMYGTGQLPKFKD-DMYKVENDDLYLISTSEIPVTNLYSNEILTQEELPLKMTCYSACFRQEAGSAGKDTRGIIRQHQFEKVELVSICKPDQSELMFEEMLNCASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEVWLPSQNKYREIS 346          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_HELMI (Seryl-tRNA synthetase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=serS PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.407e-35
Identity = 81/239 (33.89%), Postives = 129/239 (53.97%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  E+ ++  +  G P  F+FPVK H+ +G+ L+I DF   A++SG++F   K     LE  +IN  +    +RG+T +  P +V    +   G  P+ A   ++++ G D  LI TAE+PV  ++ + IL    LP+ + A+S CF             L R HQF+K+E+  F +PE S    E+L +  E +   LGL ++ + + T D+G  A + +D+E W+P  G Y EIS
Sbjct:  112 PVGTSEEDNVEVRRWGTPRTFDFPVKAHWDIGEDLNILDFQRGAKISGARFTVYKGLGARLERAVINLMMDTHAQRGYTEVLPPYLVNRQSMLGTGQLPKFAE-DMFAVAGTDYYLIPTAEVPVTNLYTNEILDADKLPIHHCAYSACFRAEAGAAGRDTRGLIRQHQFNKVELVKFTRPENSYDELEKLTKDAEHILQLLGLPYRVITLCTGDMGFSAAKTYDIEVWLPSFGAYREIS 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_DESAH (Seryl-tRNA synthetase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=serS PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.407e-35
Identity = 84/240 (35.00%), Postives = 128/240 (53.33%), Query Frame = 1
Query:    1 PVGGEDC-SIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            P+G  D  + + K VG P  F+FP+K H+ +G+ L I DF  AA+++G++F         LE  LIN+ L     + G+T    P IV    +   G  P+     ++ IEG +  LI T+E+P+  I+ D +L+E  LP+K+ A++ CF             L R HQF+K+E+  +  PE S    E L+   E +   LGL ++ V + + DLG  A R +D+E WMPG  +Y EIS
Sbjct:  112 PMGASDADNTLEKKVGTPRSFDFPIKAHWDIGEDLGILDFPRAAKITGARFSLYLGSGAKLERALINFMLDLHTNEHGYTETLPPFIVNRESLLGTGQLPK-FEEDLFKIEGQEYYLIPTSEVPMTNIYRDEVLNEENLPIKFTAYTPCFRSEAGSYGKDTRGLIRQHQFNKVELVKYTTPETSYQELESLLANAETVLKRLGLPYQVVTLCSGDLGFSATRTYDIEVWMPGQDKYREIS 350          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_SULTO (Seryl-tRNA synthetase OS=Sulfolobus tokodaii GN=serS PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 78/215 (36.28%), Postives = 120/215 (55.81%), Query Frame = 1
Query:   67 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEI 711
            PV     L   L + D   AAEVSG++FYYL ++ V L++ L+N+ +  +  +G+T +  P ++R  V+ K           +Y IE  D  LI TAE P+  ++    + +  LPLKY   S  F             ++RVHQF K+E F+F  PE+S   HEELIR  E+++  LGL ++ +++AT DLGA A +K+D+E WMP   ++ E+
Sbjct:  158 PVGHADMLENVLKLGDTKKAAEVSGARFYYLFDDIVWLDIALLNYAIDTMTSKGYTLVLPPYMLRGEVI-KSVIDLDTFKDAIYKIENEDLYLIATAEHPIAALYFKEEIPKEKLPLKYVGISPAFRKEAGAANKDLKGIFRVHQFHKVEQFIFSSPEDSWKLHEELIRNAEEIFQGLGLPYRVINIATGDLGACAAKKYDLEVWMPAQAKFREM 371          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_HALOH (Seryl-tRNA synthetase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=serS PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 84/239 (35.15%), Postives = 130/239 (54.39%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG  ED ++  +  G P  F+F  K H+ LG+ALDI DF+  ++VSG++F +LK     LE  LI++ +    + G+T +  P +V S      G  P+ A   ++ +EG D  LI TAE+PV  ++ D IL+   LP+ + A+S CF             + R HQF+K+E+  F  P++S    E+L R  E++   L L ++ V + T DL   + + +D+E WMP    Y EIS
Sbjct:  112 PVGEDEDDNVEVRRWGEPRKFDFEFKPHWDLGEALDILDFERGSKVSGARFTFLKGAGARLERSLISFMIDHHTQNGYTEIFPPFMVNSDSCIGTGQLPKFAG-DMFKVEGTDYYLIPTAEVPVTNLYRDEILNAEDLPVYHVAYSACFRAEAGAHGRDTRGIIRQHQFNKVELVKFVHPDKSFEELEKLTRNAEEILQMLELPYRVVTLCTGDLTFSSAKTYDIEVWMPAYDTYREIS 349          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_CAMJ83.702e-3635.56Seryl-tRNA synthetase OS=Campylobacter jejuni subs... [more]
SYS_METMJ4.835e-3634.18Seryl-tRNA synthetase OS=Methanoculleus marisnigri... [more]
SYS_CAMJD4.835e-3635.15Seryl-tRNA synthetase OS=Campylobacter jejuni subs... [more]
SYS_BACCZ4.835e-3636.67Seryl-tRNA synthetase OS=Bacillus cereus (strain Z... [more]
SYS_CHLAD8.247e-3635.48Seryl-tRNA synthetase OS=Chloroflexus aggregans (s... [more]
SYS_CAMLR1.077e-3534.62Seryl-tRNA synthetase OS=Campylobacter lari (strai... [more]
SYS_HELMI1.407e-3533.89Seryl-tRNA synthetase OS=Heliobacterium modestical... [more]
SYS_DESAH1.407e-3535.00Seryl-tRNA synthetase OS=Desulfobacterium autotrop... [more]
SYS_SULTO1.837e-3536.28Seryl-tRNA synthetase OS=Sulfolobus tokodaii GN=se... [more]
SYS_HALOH1.837e-3535.15Seryl-tRNA synthetase OS=Halothermothrix orenii (s... [more]

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Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
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