FC920634

Overview
NameFC920634
Unique NameFC920634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10302 contig Ccv1_Contig10302:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL---TRALASAGTEPVNLAQRLNLCVVNALGRVMLGFR 632
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YR   + E A +    +    A TE V + +RL L + N + R+M   R
Sbjct:   34 PPGPVPVPIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRTGWEAEAAAVVDDVKKNPKAATEGVVIRKRLQLMMYNNMFRIMFDRR 194          
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 48/161 (29.81%), Postives = 72/161 (44.72%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL---TRALASAGTEPVNLAQRLNLCVVNALGRVMLGFR 632
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YRH  + E A +    R    A    + + +RL L + N + R+M   R
Sbjct:   34 PPGPLPVPIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEAEAAAVVDDVRKNPDAAVSGLVIRRRLQLMMYNNMYRIMFDRR 194          
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: C71C1_MAIZE (Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 43/132 (32.58%), Postives = 62/132 (46.97%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGP--LMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASA 551
            P  P   PI+G+L  +G  PH S   L   +G   LM +++G                L+ HD   ++RP N  A  I YN  D+ F PYG  WR  RK+ + HL S K +   R  R+EE+ ++   +  A
Sbjct:   57 PTPPGKLPIIGHLHLIGSHPHVSFRDLHAKYGHNGLMLVQVGAVPTIVVSTPQAAEAVLRTHDHVLASRPRNPVADIIRYNSTDVAFAPYGVYWRTARKVVNTHLLSAKMVFSKRREREEEVRLVVARIRDA 188          
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 47/161 (29.19%), Postives = 71/161 (44.10%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL---ASAGTEPVNLAQRLNLCVVNALGRVMLGFR 632
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YRH  + E A +   +     A      + +RL L + N + R+M   R
Sbjct:   34 PPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWESEAAAVVEDVKKNPDAAVSGTVIRRRLQLMMYNNMYRIMFDRR 194          
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 46/161 (28.57%), Postives = 74/161 (45.96%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL---ASAGTEPVNLAQRLNLCVVNALGRVMLGFR 632
            PPGP P P+ GN   +G  + H++++  A+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YR+  +EE A +   +     + T  + L +RL L + N + R+M   R
Sbjct:   34 PPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAARVVEDVKKNPESATNGIVLRRRLQLMMYNNMYRIMFDRR 194          
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: C82A3_SOYBN (Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 45/165 (27.27%), Postives = 73/165 (44.24%), Query Frame = 3
Query:  180 WPIVGNLPHLG--PMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGTEP---------VNLAQRLNLCVVNALGRVMLGFRVFG 641
            WPI+G+L  L     PH+ +  LA  +GPL  ++LG              +    +D   S+RP     + ++YN   +   PYGP WR LRKI +    S + ++   H+R  E+    + L    +           V++ Q L     N + R+++G R FG
Sbjct:   45 WPILGHLSLLNGSQTPHKVLGALADKYGPLFTIKLGMKPALVLSNWEMSKELFTTNDLAVSSRPKLVAVEVMSYNQAFVGLAPYGPYWRELRKIVTFEFLSNRRIEQRNHIRVSEVRTSIKELFDIWSNGNKNESRYTLVDIKQWLAYLTFNMVVRMVVGKRYFG 209          
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: C83B1_ARATH (Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGPM-PHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEE----MAVLTRALASAGTEPVNLAQRL 584
            PPGPK  PI+GNL  +    P   +  L++ +GP+  +++G              + LK  D NF+ RP   G + ++Y  +++ F  Y   +R +RK+  V+LFS   +  +R VR+EE    M  + +A   +GT  V+L++ L
Sbjct:   30 PPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGT--VDLSELL 173          
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 48/161 (29.81%), Postives = 71/161 (44.10%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL---TRALASAGTEPVNLAQRLNLCVVNALGRVMLGFR 632
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YR   + E A +    R    A    + L +RL L + N + R+M   R
Sbjct:   34 PPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDVRRNPDAAAGGIVLRRRLQLMMYNNMYRIMFDRR 194          
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: C79A2_ARATH (Phenylalanine N-hydroxylase OS=Arabidopsis thaliana GN=CYP79A2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 47/186 (25.27%), Postives = 81/186 (43.55%), Query Frame = 3
Query:  162 PPGPKPWPIVGNLPHL----GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGTE-------PVNLAQRLNLCVVNALGRVMLGFRVFGDGT-GGSDPRADEFK 683
            PPGPK WP++GNLP +     P+     + +   +  +  +RL               + LK  DS F+ RP   G ++ +  Y  +   P G +W+ +R++ + H+ S K+       R EE   L R + +   +        ++L   +     N   ++M G R FG G+  GS P  +E +
Sbjct:   41 PPGPKSWPLIGNLPEILGRNKPVFRWIHSLMKELNTDIACIRLANTHVIPVTSPRIAREILKKQDSVFATRPLTMGTEYCSRGYLTVAVEPQGEQWKKMRRVVASHVTSKKSFQMMLQKRTEEADNLVRYINNRSVKNRGNAFVVIDLRLAVRQYSGNVARKMMFGIRHFGKGSEDGSGPGLEEIE 226          
BLAST of FC920634 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 41/125 (32.80%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  165 PGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGP--LMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL 530
            PGPK WPI+G+L  +   +PH+ +  LAR HG   LM   LG              + L     +F+NRP    A+ + +  + I F P G  WR+LR+I+S HLF+ + +  +   RQ ++  +
Sbjct:   80 PGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLT--SPHFANRPLKQSAQQLLFG-RAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAM 201          
The following BLAST results are available for this feature:
BLAST of FC920634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
TCMO_ZINEL1.139e-1230.43Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_PHAAU1.488e-1229.81Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
C71C1_MAIZE1.488e-1232.58Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 S... [more]
TCMO_SOYBN1.943e-1229.19Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_CATRO4.329e-1228.57Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
C82A3_SOYBN7.385e-1227.27Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=... [more]
C83B1_ARATH9.645e-1230.82Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CY... [more]
TCMO_GLYEC1.260e-1129.81Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
C79A2_ARATH2.149e-1125.27Phenylalanine N-hydroxylase OS=Arabidopsis thalian... [more]
C78A4_PINRA6.252e-1132.80Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]

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Properties
Property NameValue
Genbank descriptionC32011A09EF RVDevelop1 Citrus clementina cDNA clone C32011A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920634 ID=FC920634; Name=FC920634; organism=Citrus clementina; type=EST; length=689bp
GGCGACTACTCGTACCATTTCTACACTTTCTCTGGGAAACGAAACAAAGA
GCAATGTCTACTTTACCACTACTGATACTGTACACATCACTTTTGGCAAT
TGTCATTTCTTTCCTTTTTAGCCTCCTCCGGAACAGACGCAGACACTCCT
CCCACCGTCTGCCTCCCGGTCCGAAACCCTGGCCAATAGTCGGAAACCTC
CCTCACTTGGGCCCTATGCCCCACCAATCCATAGCGGGTCTGGCCCGAAC
CCACGGCCCCCTCATGTACCTCCGGTTAGGCTTCGTTGACGTCGTCGTGG
CCGCTTCCGCTTCCGTGGCGGCCCAATTCCTGAAGATCCATGATTCCAAC
TTCTCCAACCGCCCTCCCAACTCCGGCGCCAAGCACATCGCTTACAACTA
TCAGGACATCGTTTTCCGGCCGTACGGCCCCCGCTGGCGGATGCTGAGGA
AGATCAGCTCCGTTCATCTTTTCTCCGGCAAGGCCTTGGATGACTACAGG
CACGTTCGCCAGGAAGAGATGGCGGTGCTCACGCGCGCGTTGGCGAGTGC
AGGAACGGAGCCGGTGAACTTAGCTCAACGGTTGAACTTGTGCGTTGTGA
ATGCCCTAGGGCGGGTGATGCTAGGCTTCAGAGTGTTCGGCGACGGTACC
GGAGGGAGCGACCCGAGGGCTGACGAGTTCAAATCAATG
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