FC920635

Overview
NameFC920635
Unique NameFC920635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15458 contig Ccv1_Contig15458:683..1265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 54/201 (26.87%), Postives = 93/201 (46.27%), Query Frame = 1
Query:    1 EQLQGHESGLFAIYDGHLGETVPAYLQEHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGQGWIHCWYCNFDKWAKVMGSQRWRFSSSSFNGWRCS-------SYDYRP*SEH*TREH*G*SAALSLICQAMSLELMGSWQFLVPLETESLISHLRSDPDIQNTILYGRCDILVLARDGLWKVMSNQEAVDIAR 582
            + + G   GLF ++DGH G  V  Y++++LFS++L+  +F  D + +I  AY+ TD   L   S   Q    C   +    A ++G + +  +        C        S D++P     T E      A   +  A +  + G          + L  ++  DP+I+  ++    + L+LA DGLW V++N+EAVD+ R
Sbjct:   49 DSVDGQIIGLFGVFDGHGGAKVAEYVKQNLFSHLLRHPKFISDTKVAIDDAYKSTDSEFLESDSSQNQ----CG--STASTAVLVGDRLFVANVGDSRAIICRGGNAIAVSKDHKPDQ---TDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTR 240          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 52/196 (26.53%), Postives = 92/196 (46.94%), Query Frame = 1
Query:    7 LQGHESGLFAIYDGHLGETVPAYLQEHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDL----GQGWIHCWYCNFDKWAKVMGSQRWRFSSSSFNGWRCSSYDYRP*SEH*TREH*G*SAALSLICQAMSLELMGSWQFLVPLETESLISHLRSDPDIQNTILYGRCDILVLARDGLWKVMSNQEAVDIAR 582
            ++G    +F I+DGH G     YL+EHLF+N++K  +F  D + ++++ Y++TD A L    D     G             +   +G  R   S +        S D++P   + + E     +A  +I  A +  + G            L   + ++P+IQ+  +    ++LVLA DGLW V+ N++AV +A+
Sbjct:  125 IEGQAVCMFGIFDGHGGSRAAEYLKEHLFNNLMKHPQFLTDTKLALNETYKQTDVAFLESEKDTYRDDGSTASAAVLVGNHLYVANVGDSRTIVSKA--GKAIALSDDHKP---NRSDERKRIESAGGVIMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQ 315          
BLAST of FC920635 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 35.4242 bits (80), Expect = 7.895e-11
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 1
Query:   31 FAIYDGHLGETVPAYLQEHLFSNILKEEEF 120
            FA+YDGH G  V  Y  EHL  +I   ++F
Sbjct:   56 FAVYDGHAGSQVAKYCCEHLLDHITNNQDF 85          

HSP 2 Score: 31.9574 bits (71), Expect = 7.895e-11
Identity = 18/45 (40.00%), Postives = 23/45 (51.11%), Query Frame = 2
Query:  203 RGGSTAGTAILINGQRLWAANVGDSRAVLSTAGVAVHMTTDHDPN 337
            R GSTA   +LI+ Q  +  N GDSR +L         T DH P+
Sbjct:  124 RSGSTA-VGVLISPQHTYFINCGDSRGLLCRNRKVYFFTQDHKPS 167          

HSP 3 Score: 30.4166 bits (67), Expect = 7.895e-11
Identity = 17/48 (35.42%), Postives = 26/48 (54.17%), Query Frame = 1
Query:  442 TESLISHLRSDPDIQNTILYGRCD-ILVLARDGLWKVMSNQEAVDIAR 582
            TE L+S    +P++ +       D  ++LA DG+W VM N+E  D  R
Sbjct:  211 TEQLVS---PEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          

HSP 4 Score: 27.7202 bits (60), Expect = 7.895e-11
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  396 VPRVNGQLAVSRAFGD 443
            + RVNG LAVSRA GD
Sbjct:  184 IQRVNGSLAVSRALGD 199          
The following BLAST results are available for this feature:
BLAST of FC920635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
P2C45_ORYSJ3.454e-1126.87Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C76_ARATH5.891e-1126.53Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
PPM1A_BOVIN7.895e-1146.67Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC32011A10EF RVDevelop1 Citrus clementina cDNA clone C32011A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920635 ID=FC920635; Name=FC920635; organism=Citrus clementina; type=EST; length=583bp
GAGCAACTTCAAGGTCATGAATCCGGGTTGTTTGCTATTTATGACGGCCA
TTTGGGAGAAACTGTGCCTGCCTACCTACAAGAGCATTTGTTTTCCAACA
TCCTAAAGGAGGAAGAGTTTTGGGTTGACCCCCAGAGATCTATCTCCAAA
GCTTATGAGAAGACAGACCAAGCAATTCTCTCACACAGCTCTGACTTGGG
CCAGGGGTGGATCCACTGCTGGTACTGCAATTTTGATAAATGGGCAAAGG
TTATGGGCAGCCAACGTTGGAGATTCTCGAGCAGTTCTTTCAACGGCTGG
CGTTGCAGTTCATATGACTACAGACCATGATCCGAACACTGAACGAGGGA
GCATTGAGGATAAAGCGCGGCTTTGTCTCTTATATGCCAGGCGATGTCCC
TCGAGTTAATGGGCAGCTGGCAGTTTCTCGTGCCTTTGGAGACAGAGAGC
CTTATATCACATTTGCGATCAGATCCTGACATACAAAATACTATCTTATA
CGGCCGTTGTGACATCCTAGTCCTTGCAAGAGATGGTCTTTGGAAGGTGA
TGAGCAATCAAGAGGCTGTGGATATTGCAAGAA
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