FC920640

Overview
NameFC920640
Unique NameFC920640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14173 contig Ccv1_Contig14173:1..488. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920640 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  190 YVKLGYHYLINHAIYLATIPVLLLVFSAEVGSLSREELWEKLWEDTRHDLASVLGFFGVFAFTLS-----VYFMSRPRSVYLVDFACYRPPDDLQVTREQFI 480
            YVKLGYHYLI H   L  +P++ ++F   V  LS   L  +L+ ++        GF  +F  TL+     V+FMSRPRS+YL+D++CY PP   +V+ ++F+
Sbjct:   15 YVKLGYHYLITHFFKLMFLPLMAVLFM-NVSLLSLNHL--QLYYNST-------GF--IFVITLAIVGSIVFFMSRPRSIYLLDYSCYLPPSSQKVSYQKFM 104
The following BLAST results are available for this feature:
BLAST of FC920640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
KCS2_ARATH2.971e-1140.20Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32011B04EF RVDevelop1 Citrus clementina cDNA clone C32011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920640 ID=FC920640; Name=FC920640; organism=Citrus clementina; type=EST; length=488bp
GATTCTTATCAAAACTAGATAGCTATAACACATAACATTAACGTCATGGC
TAGAAGTGAACGAGACCTCCTGTCAACTGAAATTGTCAACCGTGGGATCG
AGTCCTCCGGTCCCAATGCCGGTTCTTTGACGTTCTCTGTGAGAGTCCGG
AGACGGCTGCCAGATTTTCTCCAGTCCGTGAACCTCAAGTACGTGAAGCT
AGGGTACCATTACCTCATCAACCATGCCATATATTTGGCCACCATTCCTG
TGTTGTTACTTGTGTTTAGTGCTGAAGTGGGGAGTCTCAGTAGAGAAGAG
CTCTGGGAGAAGCTCTGGGAAGATACCCGCCACGATCTCGCCTCCGTTCT
TGGCTTCTTCGGCGTGTTCGCCTTCACGCTCTCCGTTTACTTCATGTCAC
GCCCTCGCTCCGTTTATCTCGTTGATTTTGCTTGCTATCGCCCCCCCGAT
GATCTNCAGGTGACGAGAGAGCAGTTCATCGAAGTGGC
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