FC920647

Overview
NameFC920647
Unique NameFC920647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:799..1516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SHELP (60 kDa chaperonin OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=groL PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.162e-71
Identity = 139/238 (58.40%), Postives = 181/238 (76.05%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE EN  +LLVDKKI+N R+L+ +LE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q+ +S RVAQI+   E +  DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELENPYILLVDKKISNIRELLPILEGLAKTGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDDTTIIDGTGEQEQISARVAQIKIQAEESTSDYDREKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PSEMY (60 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groL PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.162e-71
Identity = 139/238 (58.40%), Postives = 175/238 (73.53%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYF+   + M  E E   LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VVL KD TTI+     Q  +  RVAQIR  +E    DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMDKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFINKPDTMVAELEGPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLESATLEHLGNAKRVVLNKDNTTIIDGAGAQADIEARVAQIRKQVEETSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PROMH (60 kDa chaperonin OS=Proteus mirabilis (strain HI4320) GN=groL PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.518e-71
Identity = 141/238 (59.24%), Postives = 179/238 (75.21%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGY+SPYF+   E    E EN  +LLVDKK++N R+L+ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     Q+A+S RVAQIR  IE+A  DY+REKL ER+AKL+GGVAVI+VGA TE E+K +R+   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGTGLEDELDVVEGMQFDRGYLSPYFINKPETGTAELENPFILLVDKKVSNIRELLPVLEGVAKANKPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTNGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGLGEQEAISGRVAQIRQQIEDATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKRARVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ALTMD (60 kDa chaperonin OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=groL PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.518e-71
Identity = 137/238 (57.56%), Postives = 179/238 (75.21%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EEG++ +N L VVEGMQFDRGY+SPYF+ + E   VE +N  +LLVDKKI+N R+L+  LE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+KV  E LG A +VV+ KD TT+V     Q+A+  R AQI+  IE +  DY++EKL ER+AKLSGGVAVI+VGA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGQALQNELDVVEGMQFDRGYLSPYFINNQENGTVELDNPFILLVDKKISNIRELLPTLEGVAKAGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEIGLELEKVQLEDLGTAKRVVINKDNTTVVDGNGDQEAIEGRCAQIKGQIEESSSDYDKEKLQERLAKLSGGVAVIKVGAATEVEMKEKKDRVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SHEAM (60 kDa chaperonin OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=groL PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.382e-71
Identity = 137/238 (57.56%), Postives = 179/238 (75.21%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  AVE +N  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     ++ +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGAVELDNPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGAEEQIKARVGQIKQQIEETTSDYDREKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.382e-71
Identity = 141/238 (59.24%), Postives = 173/238 (72.69%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            A++KV + GV+T+EE KS    L VVEGMQFDRGY+SPYFVTD ++  VEY+N  +LL DKKI + +DL+ VLED  R   P+LIIAEDIE EALATLVVNK RG L   A+KAP FG+R+   L DIA+LTGG VI +EVGL+L      VLG A K+ ++KDTT IV     +  V+ R+AQIR  +E  + DY+REKL ERIAKL+GGVAVI+VGA TETELK R+    DALNA
Sbjct:  164 AVAKVTKDGVITVEESKSLATELEVVEGMQFDRGYLSPYFVTDQDRQVVEYDNPLILLTDKKIASIQDLVPVLEDVARAGRPLLIIAEDIEGEALATLVVNKARGVLNTVAVKAPAFGDRRKAILQDIAVLTGGQVISEEVGLSLADANSSVLGKAQKITISKDTTIIVAGDENKADVAARIAQIRRSLEETDSDYDREKLQERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PSEU5 (60 kDa chaperonin OS=Pseudomonas stutzeri (strain A1501) GN=groL PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.417e-71
Identity = 138/238 (57.98%), Postives = 177/238 (74.37%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM +VG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYF+   + M  E +N  LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VVL K+ TTI+     Q  +  RVAQIR  IE+   DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMERVGKEGVITVEEGSGFENELSVVEGMQFDRGYLSPYFINKPDTMVAELDNPLLLLVDKKISNIRELLPVLEGVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLETATLEHLGNAKRVVLNKENTTIIDGAGAQADIEARVAQIRKQIEDTTSDYDKEKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_NITOC (60 kDa chaperonin OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=groL PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.417e-71
Identity = 133/238 (55.88%), Postives = 179/238 (75.21%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG   +N L VVEGMQFDRGY+SPYF+TD + MA + ++  +L+ DKKI+N RDL+ VLE   +   P+L+I+ED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L+DIA+LTGGTVI +EVGL+LDKV  + LG A K+ + K+ TTIV    + D +  RV Q+R  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMDKVGKEGVITVEEGSGLDNELEVVEGMQFDRGYLSPYFITDQQSMAADLDDPYILIHDKKISNIRDLLPVLESVAKAGKPLLVISEDVEGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLEDIAVLTGGTVISEEVGLSLDKVTLDDLGRAKKITVNKENTTIVDGAGSADDIKARVEQVRIQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEMEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ALCBS (60 kDa chaperonin OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=groL PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.417e-71
Identity = 140/238 (58.82%), Postives = 179/238 (75.21%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG+S +N L VVEGMQFDRGY+SPYF+ + EKM VE E+  +LLVDKKI+N R+L+  LE+  +   P+LIIAEDIE EALATLVVN +RG +K AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LG A KV + K+ TTIV     Q  +  RV QIR  IEN+  DY++EKL ER+AKL+GGVAVI++GA TE E+K +++   DAL+A
Sbjct:  164 AMEKVGQEGVITVEEGQSLQNELDVVEGMQFDRGYLSPYFINNQEKMQVELEDPYILLVDKKISNIRELLPALENVAKAGKPLLIIAEDIEGEALATLVVNNMRGIIKCAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLENASLEDLGTAKKVNIDKENTTIVDGAGQQADIDGRVEQIRKEIENSSSDYDKEKLQERVAKLAGGVAVIKIGAATEIEMKEKKARVDDALHA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_PSEA6 (60 kDa chaperonin OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=groL PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.769e-71
Identity = 135/238 (56.72%), Postives = 180/238 (75.63%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EEG+S +N L VVEGMQFDRGY+SPYF+ + E   VE ++  +LLVDKK++N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+A LTGGTVI +E+GL L+KV  E LG A +VV+ KD TT+V     ++A+  RVAQIR  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+K + +   DAL+A
Sbjct:  165 AMDKVGKEGVITVEEGQSLQNELEVVEGMQFDRGYLSPYFMNNQENGTVELDSPFILLVDKKVSNIRELLPTLEAVAKASKPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDLATLTGGTVISEEIGLELEKVTLEDLGTAKRVVINKDNTTVVDGAGEEEAIQGRVAQIRAQIEESSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHA 402          
The following BLAST results are available for this feature:
BLAST of FC920647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SHELP1.162e-7158.4060 kDa chaperonin OS=Shewanella loihica (strain AT... [more]
CH60_PSEMY1.162e-7158.4060 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]
CH60_PROMH1.518e-7159.2460 kDa chaperonin OS=Proteus mirabilis (strain HI4... [more]
CH60_ALTMD1.518e-7157.5660 kDa chaperonin OS=Alteromonas macleodii (strain... [more]
CH60_SHEAM3.382e-7157.5660 kDa chaperonin OS=Shewanella amazonensis (strai... [more]
CH602_SYNP63.382e-7159.2460 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH60_PSEU54.417e-7157.9860 kDa chaperonin OS=Pseudomonas stutzeri (strain ... [more]
CH60_NITOC4.417e-7155.8860 kDa chaperonin OS=Nitrosococcus oceani (strain ... [more]
CH60_ALCBS4.417e-7158.8260 kDa chaperonin OS=Alcanivorax borkumensis (stra... [more]
CH60_PSEA65.769e-7156.7260 kDa chaperonin OS=Pseudoalteromonas atlantica (... [more]

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Properties
Property NameValue
Genbank descriptionC32011C02EF RVDevelop1 Citrus clementina cDNA clone C32011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920647 ID=FC920647; Name=FC920647; organism=Citrus clementina; type=EST; length=718bp
GCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTGAAGAGGGAAA
AAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATTTGATCGTG
GTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAATGGCAGTTGAA
TATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAG
GGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTT
TGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTG
AACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTT
TGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAG
GAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAG
GAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCAC
CATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGC
AAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAG
CTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGT
TGGAGCTCAAACTGAGACAGAGCTTAAGAGAAGAAGTGAGAGTCGAGATG
CTCTTAATGCACAAGCTG
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