FC920647

Overview
NameFC920647
Unique NameFC920647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ACIF5 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 127/238 (53.36%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG  GV+T+EEG    N L VVEGMQFDRGY+SPYFV + +KM  E EN  +LL DKKI++ RD++ +LE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L+D+AILTGG V+ +E+G+ L+      LG A K+V+ K+ TT++     Q  +  RV QIR  +E+A  DY+REKL ER+AKL+GGVAVI+VGA +E E+K +++   DAL+A
Sbjct:  165 AMEKVGNEGVITVEEGSGLANELDVVEGMQFDRGYLSPYFVNNQDKMVAELENPYILLHDKKISSIRDMLPILEQVAKSSRPLLIVAEDVEGEALATLVVNTMRGIIKVAAVKAPGFGDRRKAMLEDMAILTGGRVVSEEIGMKLESTTLADLGQAKKIVIDKENTTMIDGAGQQSEIKARVEQIRRQMEDASSDYDREKLQERVAKLAGGVAVIKVGAGSEMEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ACIF2 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 127/238 (53.36%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG  GV+T+EEG    N L VVEGMQFDRGY+SPYFV + +KM  E EN  +LL DKKI++ RD++ +LE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L+D+AILTGG V+ +E+G+ L+      LG A K+V+ K+ TT++     Q  +  RV QIR  +E+A  DY+REKL ER+AKL+GGVAVI+VGA +E E+K +++   DAL+A
Sbjct:  165 AMEKVGNEGVITVEEGSGLANELDVVEGMQFDRGYLSPYFVNNQDKMVAELENPYILLHDKKISSIRDMLPILEQVAKSSRPLLIVAEDVEGEALATLVVNTMRGIIKVAAVKAPGFGDRRKAMLEDMAILTGGRVVSEEIGMKLESTTLADLGQAKKIVIDKENTTMIDGAGQQSEIKARVEQIRRQMEDASSDYDREKLQERVAKLAGGVAVIKVGAGSEMEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ACIBY (60 kDa chaperonin OS=Acinetobacter baumannii (strain AYE) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGYISPYF    + +  E EN  +LLVDKKI+N R+LI+VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILTG TVI +EVG++L++   + LG A K+ ++K+ T IV       A+++RV QIR  IE +  +Y+REKL ER+AKL+GGVAVI++GA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENPFILLVDKKISNIRELISVLEAVAKTGKPLLIIAEDVEGEALATLVVNNMRGIIKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGMSLEQATLQDLGTAHKITVSKENTVIVDGAGDAAAIAERVQQIRAQIEESTSEYDREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ACIBT (60 kDa chaperonin OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=groL PE=3 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGYISPYF    + +  E EN  +LLVDKKI+N R+LI+VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILTG TVI +EVG++L++   + LG A K+ ++K+ T IV       A+++RV QIR  IE +  +Y+REKL ER+AKL+GGVAVI++GA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENPFILLVDKKISNIRELISVLEAVAKTGKPLLIIAEDVEGEALATLVVNNMRGIIKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGMSLEQATLQDLGTAHKITVSKENTVIVDGAGDAAAIAERVQQIRAQIEESTSEYDREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ACIBS (60 kDa chaperonin OS=Acinetobacter baumannii (strain SDF) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGYISPYF    + +  E EN  +LLVDKKI+N R+LI+VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILTG TVI +EVG++L++   + LG A K+ ++K+ T IV       A+++RV QIR  IE +  +Y+REKL ER+AKL+GGVAVI++GA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENPFILLVDKKISNIRELISVLEAVAKTGKPLLIIAEDVEGEALATLVVNNMRGIIKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGMSLEQATLQDLGTAHKITVSKENTVIVDGAGDAAAIAERVQQIRAQIEESTSEYDREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ACIBC (60 kDa chaperonin OS=Acinetobacter baumannii (strain ACICU) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGYISPYF    + +  E EN  +LLVDKKI+N R+LI+VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILTG TVI +EVG++L++   + LG A K+ ++K+ T IV       A+++RV QIR  IE +  +Y+REKL ER+AKL+GGVAVI++GA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENPFILLVDKKISNIRELISVLEAVAKTGKPLLIIAEDVEGEALATLVVNNMRGIIKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGMSLEQATLQDLGTAHKITVSKENTVIVDGAGDAAAIAERVQQIRAQIEESTSEYDREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ACIB5 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB0057) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGYISPYF    + +  E EN  +LLVDKKI+N R+LI+VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILTG TVI +EVG++L++   + LG A K+ ++K+ T IV       A+++RV QIR  IE +  +Y+REKL ER+AKL+GGVAVI++GA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENPFILLVDKKISNIRELISVLEAVAKTGKPLLIIAEDVEGEALATLVVNNMRGIIKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGMSLEQATLQDLGTAHKITVSKENTVIVDGAGDAAAIAERVQQIRAQIEESTSEYDREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_ACIB3 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB307-0294) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 131/238 (55.04%), Postives = 174/238 (73.11%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGYISPYF    + +  E EN  +LLVDKKI+N R+LI+VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILTG TVI +EVG++L++   + LG A K+ ++K+ T IV       A+++RV QIR  IE +  +Y+REKL ER+AKL+GGVAVI++GA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENPFILLVDKKISNIRELISVLEAVAKTGKPLLIIAEDVEGEALATLVVNNMRGIIKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGMSLEQATLQDLGTAHKITVSKENTVIVDGAGDAAAIAERVQQIRAQIEESTSEYDREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH603_NITWN (60 kDa chaperonin 3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL3 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 130/238 (54.62%), Postives = 173/238 (72.69%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE KS E  + +VEGM+FDRGY+SPYFVT++EKMA E ++  +LL +KK+T  + L+ VLE  ++   P+LI+AED+E EALA LVVN+LRG LK+AA+KAPGFG+R+   L+DIAILT G +I DE+G+ L+ V   +LG A KV++ K+ TTIV     +  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K + +   DALNA
Sbjct:  165 AMQKVGNDGVITVEENKSLETDVDIVEGMKFDRGYLSPYFVTNAEKMAAELDDAYILLHEKKLTGLQALLPVLEAVVKSGKPLLIVAEDVEGEALAALVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTSGQLISDELGMKLENVTLNMLGRAKKVLIDKENTTIVNGAGKKKDIEARVGQIRARIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKEKKDRVEDALNA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH603_BURCH (60 kDa chaperonin 3 OS=Burkholderia cenocepacia (strain HI2424) GN=groL3 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 132/238 (55.46%), Postives = 171/238 (71.85%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+E+GKS EN L VVEGMQFDRGY+SPYF+ D  K A   ++  +LL DKKI++ RDL+ +LE A +   P+LI+AED+E EALATLVVN +RG LK+AA+KAPGFG+R+   L+D+AILTG TVI +E G  LDK   E LG+A +V + KD T I+        +  RV  IR  I+ A  DY+REKL ER+AKL+GGVAVI+VGA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGKDGVITVEDGKSLENELDVVEGMQFDRGYVSPYFINDPAKQAAYLDDALILLHDKKISSVRDLLPILEAASKAGKPLLIVAEDVEAEALATLVVNSMRGILKVAAVKAPGFGDRRKAMLEDLAILTGATVISEETGKQLDKATLEDLGSAKRVEVRKDDTIIIDGAGDAARIEARVKSIRVQIDEATSDYDREKLQERVAKLAGGVAVIKVGAVTEVEMKEKKDRVDDALHA 402          
The following BLAST results are available for this feature:
BLAST of FC920647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACIF52.963e-6753.3660 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH60_ACIF22.963e-6753.3660 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH60_ACIBY2.963e-6755.0460 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIBT2.963e-6755.0460 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIBS2.963e-6755.0460 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIBC2.963e-6755.0460 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIB52.963e-6755.0460 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIB32.963e-6755.0460 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH603_NITWN2.963e-6754.6260 kDa chaperonin 3 OS=Nitrobacter winogradskyi (s... [more]
CH603_BURCH2.963e-6755.4660 kDa chaperonin 3 OS=Burkholderia cenocepacia (s... [more]

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Properties
Property NameValue
Genbank descriptionC32011C02EF RVDevelop1 Citrus clementina cDNA clone C32011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920647 ID=FC920647; Name=FC920647; organism=Citrus clementina; type=EST; length=718bp
GCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTGAAGAGGGAAA
AAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATTTGATCGTG
GTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAATGGCAGTTGAA
TATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAG
GGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTT
TGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTG
AACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTT
TGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAG
GAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAG
GAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCAC
CATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGC
AAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAG
CTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGT
TGGAGCTCAAACTGAGACAGAGCTTAAGAGAAGAAGTGAGAGTCGAGATG
CTCTTAATGCACAAGCTG
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