FC920647

Overview
NameFC920647
Unique NameFC920647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:799..1516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.863e-70
Identity = 140/238 (58.82%), Postives = 175/238 (73.53%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EE KS  + L VVEGMQFDRGY+SPYF+TD+EKM VE  +  +LL DKKITN +DL+ VLE   +   P+LIIAEDIE EALATLVVNKLRG L I+A+KAPGFG+R+   L+DIAILTGGTVI +E+G  L+      LG A ++++ KD TTIV     +D +  RV QI+  I     DY+REKL ER+AKLSGGVAVI+VGA TETE+K + +   DAL+A
Sbjct:  164 AMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITDAEKMQVELNSPLVLLFDKKITNLKDLLPVLEQVQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGTVISEELGRTLESASIADLGKAERILIDKDNTTIVNGAGKKDDIKARVDQIKAQIAVTSSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_SINMW (60 kDa chaperonin 2 OS=Sinorhizobium medicae (strain WSM419) GN=groL2 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.863e-70
Identity = 137/238 (57.56%), Postives = 180/238 (75.63%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYF+T+ EKM VE E+  +LL +KK++N + +I +LE  I+   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +E+G  L+    ++LG A +V++ K+TTTIV    ++  +  RVAQI+  IE+   DY+REKL ER+AKL+GGVAVI+VG  TE E+K + +   DAL+A
Sbjct:  165 AMEKVGNEGVITVEEAKTAEIELEVVEGMQFDRGYLSPYFITNQEKMRVELEDAYILLHEKKLSNLQAMIPILESVIQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKSMLEDIAILTGGTVISEELGTKLESATIDILGRAKRVMVEKETTTIVDGAGSKADIGGRVAQIKAQIEDTTSDYDREKLQERLAKLAGGVAVIRVGGSTEIEVKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH601_VIBPA (60 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=groL1 PE=3 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 2.863e-70
Identity = 136/238 (57.14%), Postives = 181/238 (76.05%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM +VGR GV+T+EEG++ ++ L VVEGMQFDRGY+SPYF+ + E  +VE EN  +LLVDKKI+N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+KV  E LG A +V +TK+ +TI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+K + +   DAL+A
Sbjct:  165 AMERVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQEAGSVELENPFILLVDKKISNIRELLPTLEAVAKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEIGLELEKVTLEDLGQAKRVSITKENSTIIDGAGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH601_METCA (60 kDa chaperonin 1 OS=Methylococcus capsulatus GN=groL1 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.863e-70
Identity = 131/238 (55.04%), Postives = 180/238 (75.63%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+E+G   EN L +VEGMQFDRGY+SPYF+ + + M+ E EN  +L+ +KKI+N R+L+ VLE   +   P++I+AED+E EALATLVVN +RG LK+AA+KAPGFG+R+   L+DIA+LTGGTVI +++GL+L+K     LG A KV +TK+ TTI+    + +A+  RVAQIR  IE+   DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMDKVGKEGVITVEDGSGLENQLDIVEGMQFDRGYLSPYFINNQQSMSAELENPFILINEKKISNIRELLPVLEGVAKAGRPLVIVAEDVEGEALATLVVNNMRGILKVAAVKAPGFGDRRKAMLEDIAVLTGGTVISEDIGLSLEKATLADLGTAKKVQITKENTTIIDGAGSSEAIQGRVAQIRKQIEDTTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.739e-70
Identity = 136/238 (57.14%), Postives = 175/238 (73.53%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE K  E    VVEGMQFDRGY+SPYFVT+++KM  E E+C +LL +KK+++ + ++ +LE  I+   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A K+ +TKD TTIV     +  +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +   DALNA
Sbjct:  165 AMQKVGNDGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADKMTAELEDCLILLHEKKLSSLQPMVPLLEQVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGTAKKIQITKDETTIVDGAGEKAEIEARVAQIRAQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SACD2 (60 kDa chaperonin OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=groL PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.739e-70
Identity = 136/238 (57.14%), Postives = 175/238 (73.53%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM+KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYF+ + E M+VE E   +LLVDKKI+N R+L+ VLE   +   P++I+AED+E EALATLVVN +RG +K+ A KAPGFG+R+   L DIAILTGGTVI +EVGL L+    E LG+A +V +TK+ +TIV        +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  164 AMAKVGKEGVITVEEGSGLENELDVVEGMQFDRGYLSPYFINNQESMSVEIEQPYILLVDKKISNIRELLPVLEAVAKSGKPLVIVAEDVEGEALATLVVNNMRGIVKVTACKAPGFGDRRKAMLQDIAILTGGTVISEEVGLDLESATLEHLGSAKRVTMTKENSTIVDGAGVAADIESRVAQIRAQIEETSSDYDREKLQERVAKLAGGVAVIKVGAMTEVEMKEKKARVEDALHA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_HELPJ (60 kDa chaperonin OS=Helicobacter pylori J99 GN=groL PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.739e-70
Identity = 137/238 (57.56%), Postives = 178/238 (74.79%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EE K  E+ L VVEGMQFDRGY+SPYFVT++EKM  + +N  +LL DKKI++ +D++ +LE  ++   P+LIIAEDIE EAL TLVVNKLRG L IAA+KAPGFG+R+ + L DIAILTGG VI +E+GL+L+    E LG A ++V+ KD TTIV      D V  RVAQI+T I +   DY++EKL ER+AKLSGGVAVI+VGA +E E+K + +   DAL+A
Sbjct:  164 AMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_HELPH (60 kDa chaperonin OS=Helicobacter pylori (strain HPAG1) GN=groL PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.739e-70
Identity = 137/238 (57.56%), Postives = 178/238 (74.79%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EE K  E+ L VVEGMQFDRGY+SPYFVT++EKM  + +N  +LL DKKI++ +D++ +LE  ++   P+LIIAEDIE EAL TLVVNKLRG L IAA+KAPGFG+R+ + L DIAILTGG VI +E+GL+L+    E LG A ++V+ KD TTIV      D V  RVAQI+T I +   DY++EKL ER+AKLSGGVAVI+VGA +E E+K + +   DAL+A
Sbjct:  164 AMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_VIBVY (60 kDa chaperonin 2 OS=Vibrio vulnificus (strain YJ016) GN=groL2 PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.739e-70
Identity = 136/238 (57.14%), Postives = 178/238 (74.79%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVGR GV+T+EEG+   N L VVEGMQFDRGY+SPYF+T+ +  AVE +N  +LLVDKK+++ R+L+ VLE   + +  +LIIAEDI+ EALATLVVN LRG ++ AA+KAPGFG+ +   L+DIA+LT GTVI +E+GL L+K   E LG+A KV +TKDTTTIVG  + + A+  RVA I   IEN    Y++EKL +RIAKLSGGVAVI++GA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNPYILLVDKKVSSIRELLPVLESVAKASRSLLIIAEDIDGEALATLVVNNLRGIVRAAAVKAPGFGDNRKAMLEDIAVLTAGTVISEEIGLELEKATIEQLGSAKKVTITKDTTTIVGGAAQESAIRDRVATIEKQIENTTSSYDKEKLQQRIAKLSGGVAVIKIGAATEVEMKEKKDRVDDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_VIBVU (60 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.739e-70
Identity = 136/238 (57.14%), Postives = 178/238 (74.79%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVGR GV+T+EEG+   N L VVEGMQFDRGY+SPYF+T+ +  AVE +N  +LLVDKK+++ R+L+ VLE   + +  +LIIAEDI+ EALATLVVN LRG ++ AA+KAPGFG+ +   L+DIA+LT GTVI +E+GL L+K   E LG+A KV +TKDTTTIVG  + + A+  RVA I   IEN    Y++EKL +RIAKLSGGVAVI++GA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNPYILLVDKKVSSIRELLPVLESVAKASRSLLIIAEDIDGEALATLVVNNLRGIVRAAAVKAPGFGDNRKAMLEDIAVLTAGTVISEEIGLELEKATIEQLGSAKKVTITKDTTTIVGGAAQESAIRDRVATIEKQIENTTSSYDKEKLQQRIAKLSGGVAVIKIGAATEVEMKEKKDRVDDALHA 402          
The following BLAST results are available for this feature:
BLAST of FC920647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CAMHC2.863e-7058.8260 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH602_SINMW2.863e-7057.5660 kDa chaperonin 2 OS=Sinorhizobium medicae (stra... [more]
CH601_VIBPA2.863e-7057.1460 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=... [more]
CH601_METCA2.863e-7055.0460 kDa chaperonin 1 OS=Methylococcus capsulatus GN... [more]
CH60_SILST3.739e-7057.1460 kDa chaperonin OS=Silicibacter sp. (strain TM10... [more]
CH60_SACD23.739e-7057.1460 kDa chaperonin OS=Saccharophagus degradans (str... [more]
CH60_HELPJ3.739e-7057.5660 kDa chaperonin OS=Helicobacter pylori J99 GN=gr... [more]
CH60_HELPH3.739e-7057.5660 kDa chaperonin OS=Helicobacter pylori (strain H... [more]
CH602_VIBVY3.739e-7057.1460 kDa chaperonin 2 OS=Vibrio vulnificus (strain Y... [more]
CH602_VIBVU3.739e-7057.1460 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 ... [more]

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Properties
Property NameValue
Genbank descriptionC32011C02EF RVDevelop1 Citrus clementina cDNA clone C32011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920647 ID=FC920647; Name=FC920647; organism=Citrus clementina; type=EST; length=718bp
GCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTGAAGAGGGAAA
AAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATTTGATCGTG
GTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAATGGCAGTTGAA
TATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAG
GGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTT
TGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTG
AACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTT
TGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAG
GAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAG
GAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCAC
CATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGC
AAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAG
CTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGT
TGGAGCTCAAACTGAGACAGAGCTTAAGAGAAGAAGTGAGAGTCGAGATG
CTCTTAATGCACAAGCTG
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