FC920647

Overview
NameFC920647
Unique NameFC920647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:799..1516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.884e-70
Identity = 139/238 (58.40%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EE KS    L VVEGMQFD+GY+SPYFVTD+E+M  + +   +LL DKKI+  +DLI VLE   R   P+LII+ED+E EALATLVVNKLRG L   A+KAPGFG+R+   L DIA+LTGG VI +++GL L+ V  ++LG A KV +TKD TTIV     + AV KR+AQI   +E+ + D++REKL ER+AKL+GGVAVI+VGA TETELK R+    DALNA
Sbjct:  164 AMDKVGKEGVITVEESKSLVTELDVVEGMQFDKGYVSPYFVTDTERMITDLDEPFILLTDKKISIIQDLIPVLEKVARAGRPLLIISEDLEGEALATLVVNKLRGVLNCVAVKAPGFGDRRKAMLQDIAVLTGGDVISEDIGLKLENVTIDMLGKARKVTITKDKTTIVAGTDNKAAVEKRIAQIHKQMEDTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKDRKLRIEDALNA 401          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 4.884e-70
Identity = 135/238 (56.72%), Postives = 175/238 (73.53%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            A+ KV + GV+T+EE KS    L VVEGMQ DRGYISPYF+T++E+  VE EN ++L+ DKKI++ ++L+ VLE   R   P+LIIAED+E +ALATLVVNK RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK R+    DALNA
Sbjct:  163 AVEKVTKDGVITVEESKSLTTELDVVEGMQIDRGYISPYFITNNERQTVELENVRILITDKKISSIQELVPVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNA 400          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH601_VIBHA (60 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.884e-70
Identity = 135/238 (56.72%), Postives = 180/238 (75.63%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVGR GV+T+EEG++ ++ L VVEGMQFDRGY+SPYF+ + E  +V+ EN  +LL+DKK++N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGG VI +EVGL L+KV  E LG A +V +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+K + +   DAL+A
Sbjct:  165 AMEKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQEAGSVDLENPFILLIDKKVSNIRELLPALEAVAKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGIVISEEVGLELEKVALEDLGQAKRVAITKENTTIIDGVGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 4.884e-70
Identity = 137/238 (57.56%), Postives = 178/238 (74.79%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+ EKM  + E+  +LL +KK++N + ++ VLE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A KV +TK+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K + +   DALNA
Sbjct:  165 AMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAFILLHEKKLSNLQAMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SHEFN (60 kDa chaperonin OS=Shewanella frigidimarina (strain NCIMB 400) GN=groL PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.378e-70
Identity = 131/238 (55.04%), Postives = 182/238 (76.47%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  ++E ++  +LLVDKK++N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +V++TKD TTI+     Q  +S RV+QI+  +E++  DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSIELDSPFILLVDKKVSNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVIITKDNTTIIDGSGDQVQISARVSQIKQQVEDSTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SHEDO (60 kDa chaperonin OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=groL PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.378e-70
Identity = 132/238 (55.46%), Postives = 181/238 (76.05%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  ++E ++  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+        ++ RVAQI+  +E++  DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGQALENELEVVEGMQFDRGYLSPYFINKPETGSIELDSPFILLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGSGEHTQITSRVAQIKQQMEDSSSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SHEB8 (60 kDa chaperonin OS=Shewanella baltica (strain OS185) GN=groL PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.378e-70
Identity = 133/238 (55.88%), Postives = 181/238 (76.05%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE ++  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  ++ RV+QI+  +E +  DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQTQIAARVSQIKQQVEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_SHEB5 (60 kDa chaperonin OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=groL PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.378e-70
Identity = 133/238 (55.88%), Postives = 181/238 (76.05%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELK-RRSESRDALNA 711
            AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE ++  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+AILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     Q  ++ RV+QI+  +E +  DY++EKL ER+AKL+GGVAVI+VGA TE E+K +++   DAL+A
Sbjct:  165 AMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQTQIAARVSQIKQQVEESTSDYDKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_AGRVS (60 kDa chaperonin OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=groL PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.378e-70
Identity = 136/238 (57.14%), Postives = 178/238 (74.79%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+ EKM  + E+  +LL +KK++N + ++ VLE  ++   P++IIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A K+ +TK+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+K R +   DALNA
Sbjct:  165 AMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYVLLHEKKLSNLQAMLPVLEAVVQTGKPLVIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLETVTLDMLGRAKKISITKENTTIVDGAGQKSDIEGRVAQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGSTEIEVKERKDRIDDALNA 402          
BLAST of FC920647 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.330e-70
Identity = 137/238 (57.56%), Postives = 176/238 (73.95%), Query Frame = 1
Query:    1 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKRRSES-RDALNA 711
            AM KVG+ GV+T+EE KS ++ L VVEGMQFDRGY+SPYF+T++EKM VE ++  +LL DKKITN +DL+ VLE   +   P+LIIAEDIE EALATLVVNKLRG L I+A+KAPGFG+R+   L+DIAILTGG V+ +E+G  L+      LG AS V++ KD TTIV     + A+  R+ QI+  I     DY++EKL ER+AKLSGGVAVI+VGA TETE+K + +   DAL+A
Sbjct:  164 AMEKVGKDGVITVEEAKSIQDELNVVEGMQFDRGYLSPYFITNAEKMQVELQSPYILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVVSEELGRTLESATLSDLGQASSVIIDKDNTTIVNGAGEKSAIDARIIQIKAQIAETTSDYDKEKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSA 401          
The following BLAST results are available for this feature:
BLAST of FC920647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_GLOVI4.884e-7058.4060 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH602_ANAVT4.884e-7056.7260 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH601_VIBHA4.884e-7056.7260 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=... [more]
CH601_RHIME4.884e-7057.5660 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1... [more]
CH60_SHEFN6.378e-7055.0460 kDa chaperonin OS=Shewanella frigidimarina (str... [more]
CH60_SHEDO6.378e-7055.4660 kDa chaperonin OS=Shewanella denitrificans (str... [more]
CH60_SHEB86.378e-7055.8860 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH60_SHEB56.378e-7055.8860 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH60_AGRVS6.378e-7057.1460 kDa chaperonin OS=Agrobacterium vitis (strain S... [more]
CH60_WOLRE8.330e-7057.5660 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011C02EF RVDevelop1 Citrus clementina cDNA clone C32011C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920647 ID=FC920647; Name=FC920647; organism=Citrus clementina; type=EST; length=718bp
GCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTGAAGAGGGAAA
AAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAATTTGATCGTG
GTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAATGGCAGTTGAA
TATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGCAAG
GGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAATTT
TGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTCGTG
AACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTT
TGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAG
GAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAG
GAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCAC
CATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGC
AAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAG
CTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGT
TGGAGCTCAAACTGAGACAGAGCTTAAGAGAAGAAGTGAGAGTCGAGATG
CTCTTAATGCACAAGCTG
back to top