FC920658

Overview
NameFC920658
Unique NameFC920658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_SOLLC (Adenosylhomocysteinase OS=Solanum lycopersicum GN=SAHH PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.543e-48
Identity = 93/123 (75.61%), Postives = 99/123 (80.49%), Query Frame = 3
Query:   90 RMKDLCTRLTFGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            ++KD+ ++  FG  EIELAEVEMPGLMA RAEFGPSQP KGAKIT SLHMTIQTA LIETLTALG EVRWCSCNIFSTQDH              WKGETLQEYWWCTE+ALDWGPGGGPDLI
Sbjct:   15 KVKDM-SQADFGRLEIELAEVEMPGLMASRAEFGPSQPVKGAKITCSLHMTIQTAFLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLI 136          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_WHEAT (Adenosylhomocysteinase OS=Triticum aestivum GN=SAHH PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 5.665e-48
Identity = 90/123 (73.17%), Postives = 99/123 (80.49%), Query Frame = 3
Query:   90 RMKDLCTRLTFGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            ++KDL  +  FG  E+ELAEVEMPGLMACR EFGPSQPFKGA+I+GSLHMTIQTAVLIETLTALG EVRWCSCNIFS+QDH              WKGETL+EYWWCTE+ LDWG GGGPDLI
Sbjct:   15 KVKDLF-QADFGRLELELAEVEMPGLMACRTEFGPSQPFKGARISGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSSQDHAAAAIARDSAAVFAWKGETLEEYWWCTERCLDWGVGGGPDLI 136          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_BACFR (Adenosylhomocysteinase OS=Bacteroides fragilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.916e-36
Identity = 73/117 (62.39%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  108 TRLTFGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            T   FG  EI+LAE EMPGLMA R ++G S+P KGA+I GSLHMTIQTAVLIETL ALG EVRWCSCNI+STQDH              WKGETL +YWWCT +AL++  G GP +I
Sbjct:   32 TLADFGRKEIDLAEKEMPGLMALREKYGESKPLKGARIMGSLHMTIQTAVLIETLVALGAEVRWCSCNIYSTQDHAAAAIAASGVAVFAWKGETLADYWWCTLQALNFEGGKGPTVI 148          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_BACTN (Adenosylhomocysteinase OS=Bacteroides thetaiotaomicron GN=ahcY PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 6.497e-36
Identity = 72/117 (61.54%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  108 TRLTFGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            T   FG  EI+LAE EMPGLMA R ++G S+P KGA+I GSLHMTIQTAVLIETL ALG EVRWCSCNI+STQDH              WKGE L +YWWCT +AL++  G GP++I
Sbjct:   21 TLADFGRKEIDLAEKEMPGLMALREKYGESKPLKGARIMGSLHMTIQTAVLIETLVALGAEVRWCSCNIYSTQDHAAAAIAASGVAVFAWKGENLADYWWCTLQALNFPGGKGPNVI 137          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_STRAZ (Adenosylhomocysteinase OS=Streptomyces atroolivaceus GN=ahcY PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.447e-35
Identity = 70/113 (61.95%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            FG  EI LAE EMPGLM+ R E+  +QP  GA+ITGSLHMT+QTAVLIETL ALG +VRW SCNI+STQDH              WKGETL+EYWWCTE+AL W    GP++I
Sbjct:   22 FGRKEITLAEHEMPGLMSIREEYAAAQPLAGARITGSLHMTVQTAVLIETLVALGADVRWVSCNIYSTQDHAAAAIAAAGIPVFAWKGETLEEYWWCTEQALTWPGHTGPNMI 134          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_STRGG (Adenosylhomocysteinase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=ahcY PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.183e-35
Identity = 75/124 (60.48%), Postives = 83/124 (66.94%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW--GPGGGPDLI 458
            FG  EI LAE EMPGLM+ R EF  +QP  GA+ITGSLHMT+QTAVLIETL ALG EVRW SCNIFSTQDH                       WKGETL+EYWWCTE+AL W   P GGP++I
Sbjct:   20 FGRKEITLAEHEMPGLMSIRKEFAAAQPLAGARITGSLHMTVQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAVGPNGTPEAPAGVPVFAWKGETLEEYWWCTEQALTWPNTPTGGPNMI 143          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_STRCO (Adenosylhomocysteinase OS=Streptomyces coelicolor GN=ahcY PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.382e-35
Identity = 74/124 (59.68%), Postives = 83/124 (66.94%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDW--GPGGGPDLI 458
            FG  EI LAE EMPGLMA R E+  +QP  GA++TGSLHMT+QTAVLIETL ALG EVRW SCNIFSTQDH                       WKGETL+EYWWCTE+AL W   P GGP++I
Sbjct:   20 FGRKEITLAEHEMPGLMAIRKEYAEAQPLAGARVTGSLHMTVQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAVGPNGTPDNPQGVPVFAWKGETLEEYWWCTEQALTWPNTPTGGPNMI 143          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_SINMW (Adenosylhomocysteinase OS=Sinorhizobium medicae (strain WSM419) GN=ahcY PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.382e-35
Identity = 72/113 (63.72%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            FG  EI +AE EMPGLMACR EFG S+P KGA+ITGSLHMTIQTAVLIETL ALG EVRW SCNIFSTQDH               KGETL+EYW  T+K   W  GG  ++I
Sbjct:   17 FGRKEIAIAETEMPGLMACREEFGASKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAASGVPVFAVKGETLEEYWTYTDKIFQWADGGVSNMI 129          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_RHIME (Adenosylhomocysteinase OS=Rhizobium meliloti GN=ahcY PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.382e-35
Identity = 72/113 (63.72%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            FG  EI +AE EMPGLMACR EFG S+P KGA+ITGSLHMTIQTAVLIETL ALG EVRW SCNIFSTQDH               KGETL+EYW  T+K   W  GG  ++I
Sbjct:   17 FGRKEIAIAETEMPGLMACREEFGASKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAASGVPVFAVKGETLEEYWTYTDKIFQWADGGVSNMI 129          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_PELLD (Adenosylhomocysteinase OS=Pelodictyon luteolum (strain DSM 273) GN=ahcY PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.225e-34
Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            +G  EI++AE EMPGLMA R ++   +P KGA++ GSLHMTIQTAVLIETL  LG +VRW SCNIFSTQDH              WKGETL++YWWCT + LD+G G GP+LI
Sbjct:   20 WGRKEIDIAEKEMPGLMAIRKKYAGQKPLKGARVAGSLHMTIQTAVLIETLVDLGADVRWASCNIFSTQDHAAAAIAATGVPVFAWKGETLEDYWWCTRQILDFGDGQGPNLI 132          
The following BLAST results are available for this feature:
BLAST of FC920658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SAHH_SOLLC2.543e-4875.61Adenosylhomocysteinase OS=Solanum lycopersicum GN=... [more]
SAHH_WHEAT5.665e-4873.17Adenosylhomocysteinase OS=Triticum aestivum GN=SAH... [more]
SAHH_BACFR2.916e-3662.39Adenosylhomocysteinase OS=Bacteroides fragilis GN=... [more]
SAHH_BACTN6.497e-3661.54Adenosylhomocysteinase OS=Bacteroides thetaiotaomi... [more]
SAHH_STRAZ1.447e-3561.95Adenosylhomocysteinase OS=Streptomyces atroolivace... [more]
SAHH_STRGG7.183e-3560.48Adenosylhomocysteinase OS=Streptomyces griseus sub... [more]
SAHH_STRCO9.382e-3559.68Adenosylhomocysteinase OS=Streptomyces coelicolor ... [more]
SAHH_SINMW9.382e-3563.72Adenosylhomocysteinase OS=Sinorhizobium medicae (s... [more]
SAHH_RHIME9.382e-3563.72Adenosylhomocysteinase OS=Rhizobium meliloti GN=ah... [more]
SAHH_PELLD1.225e-3459.29Adenosylhomocysteinase OS=Pelodictyon luteolum (st... [more]

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Properties
Property NameValue
Genbank descriptionC32011D03EF RVDevelop1 Citrus clementina cDNA clone C32011D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920658 ID=FC920658; Name=FC920658; organism=Citrus clementina; type=EST; length=459bp
TCTCTTCCTTCTTTCTTATAGATGCATCAATACTATTAATCAACCATGGC
GTTTGCATTCGAGAAATCCGCTAGGCGGACTTGAATTCAAGGATGAAGGA
TCTGTGCACCAGGCTGACTTTCGGGCCACACGAAATCGAGTTGGCCGAAG
TCGAAATGCCGGGGCTCATGGCTTGCCGCGCCGAGTTCGGCCCTTCACAG
CCTTTCAAAGGAGCCAAGATCACCGGTTCACTCCACATGACCATCCAGAC
AGCCGTCCTCATCGAGACACTCACCGCTCTCGGCGACGAAGTCCGCTGGT
GCTCCTGCAACATCTTCTCAACCCAAGACCACGCGGCCGCCGCCATCGCA
CGTGACTCCGCCTCCGTCTTTGCCTGGAAGGGTGAGACCCTCCAGGAGTA
CTGGTGGTGCACGGAGAAAGCCCTGGACTGGGGTCCCGGCGGCGGCCCAG
ATCTCATCG
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