FC920658

Overview
NameFC920658
Unique NameFC920658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_RALPJ (Adenosylhomocysteinase OS=Ralstonia pickettii (strain 12J) GN=ahcY PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.956e-32
Identity = 68/113 (60.18%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            +G  EI +AE EMPGLMA R EF  SQP KGA+I GSLHMTIQTAVLIETL ALG +VRW SCNIFSTQDH              +KGE+LQEYW  T +  +W  GG P++I
Sbjct:   21 WGRKEIAIAETEMPGLMAIRDEFAASQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQDHAAAAIAATGTPVFAFKGESLQEYWDFTHRIFEWADGGTPNMI 133          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_METS4 (Adenosylhomocysteinase OS=Methylobacterium sp. (strain 4-46) GN=ahcY PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.956e-32
Identity = 69/113 (61.06%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            FG  EI +AE EMPGLMA RAE+  SQP KGAKI GSLHMTIQTAVLIETL ALG ++RW SCNI+STQDH               KGETL EYW  T +  DW  GG P++I
Sbjct:   17 FGRKEIAIAETEMPGLMAVRAEYAASQPLKGAKIAGSLHMTIQTAVLIETLKALGADIRWVSCNIYSTQDHAAAAIAAAGIPVFAVKGETLTEYWDYTARLFDWHDGGMPNMI 129          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_RALME (Adenosylhomocysteinase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ahcY PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.358e-32
Identity = 67/113 (59.29%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            +G  EI +AE EMPGLMA R EF  +QP KGA+I GSLHMTIQTAVLIETL ALG +VRW SCNIFSTQDH              +KGE+L+EYW  T +  DW  GG P++I
Sbjct:   21 WGRKEIAIAETEMPGLMAIRDEFAAAQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQDHAAAAIAASGTPVFAFKGESLKEYWDFTHRIFDWADGGTPNMI 133          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_RALEH (Adenosylhomocysteinase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ahcY PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.358e-32
Identity = 67/113 (59.29%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            +G  EI +AE EMPGLMA R EF  +QP KGA+I GSLHMTIQTAVLIETL ALG +VRW SCNIFSTQDH              +KGE+L+EYW  T +  DW  GG P++I
Sbjct:   21 WGRKEIAIAETEMPGLMAIRDEFAAAQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQDHAAAAIAAGGTPVFAFKGESLKEYWDFTHRIFDWADGGTPNMI 133          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_PROM3 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ahcY PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.358e-32
Identity = 66/113 (58.41%), Postives = 76/113 (67.26%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            FG  E+ +AE EMPGLMA R + G  +P KGA+I GSLHMTIQT VLIETL ALG +VRW SCNIFSTQDH               KGETL EYW  T + L+WG GG P++I
Sbjct:   27 FGRKELSIAETEMPGLMALRVKHGSEKPLKGARIAGSLHMTIQTGVLIETLVALGADVRWASCNIFSTQDHAAAAIAASGVPVFATKGETLDEYWAYTHRILEWGDGGTPNMI 139          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_DESVV (Adenosylhomocysteinase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ahcY PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.358e-32
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            +G  +++L+E EMPGLM    ++G ++P KG K+TGSLHMTIQTA+LI TL  LG ++RW SCNIFSTQDH               WKGETL++YWWCTE AL W  G GPDL+
Sbjct:   26 YGRKDLQLSEREMPGLMELIRKYGGTKPLKGLKVTGSLHMTIQTAMLIRTLYELGADIRWASCNIFSTQDHAAAAIAASGMAKVFAWKGETLEDYWWCTEMALTWPDGSGPDLL 139          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_DESVH (Adenosylhomocysteinase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ahcY PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.358e-32
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            +G  +++L+E EMPGLM    ++G ++P KG K+TGSLHMTIQTA+LI TL  LG ++RW SCNIFSTQDH               WKGETL++YWWCTE AL W  G GPDL+
Sbjct:   26 YGRKDLQLSEREMPGLMELIRKYGGTKPLKGLKVTGSLHMTIQTAMLIRTLYELGADIRWASCNIFSTQDHAAAAIAASGMAKVFAWKGETLEDYWWCTEMALTWPDGSGPDLL 139          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_CUPTR (Adenosylhomocysteinase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ahcY PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.358e-32
Identity = 67/113 (59.29%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            +G  EI +AE EMPGLMA R EF  +QP KGA+I GSLHMTIQTAVLIETL ALG +VRW SCNIFSTQDH              +KGE+L+EYW  T +  DW  GG P++I
Sbjct:   21 WGRKEIAIAETEMPGLMAIRDEFAAAQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQDHAAAAIAAGGTPVFAFKGESLKEYWDFTHRIFDWADGGTPNMI 133          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_RALSO (Adenosylhomocysteinase OS=Ralstonia solanacearum GN=ahcY PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.692e-32
Identity = 67/113 (59.29%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            +G  EI +AE EMPGLMA R EF  SQP KGA+I GSLHMTIQTAVLIETL ALG +VRW SCNIFSTQDH              +KGE+L+EYW  T +  +W  GG P++I
Sbjct:   21 WGRKEIAIAETEMPGLMAIRDEFAASQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQDHAAAAIAASGTPVFAFKGESLKEYWDFTHRIFEWADGGTPNMI 133          
BLAST of FC920658 vs. ExPASy Swiss-Prot
Match: SAHH_PROMM (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ahcY PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.692e-32
Identity = 65/113 (57.52%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  120 FGPHEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGDEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLI 458
            FG  E+ +AE EMPGL+A R ++G  +P KGA+I GSLHMTIQT VLIETL ALG +VRW SCNIFSTQDH               KGETL EYW  T + L+WG GG P++I
Sbjct:   27 FGRKELSIAETEMPGLIALRIKYGSEKPLKGARIAGSLHMTIQTGVLIETLVALGADVRWASCNIFSTQDHAAAAIAASGVPVFATKGETLDEYWAYTHRILEWGDGGTPNMI 139          
The following BLAST results are available for this feature:
BLAST of FC920658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SAHH_RALPJ1.956e-3260.18Adenosylhomocysteinase OS=Ralstonia pickettii (str... [more]
SAHH_METS41.956e-3261.06Adenosylhomocysteinase OS=Methylobacterium sp. (st... [more]
SAHH_RALME4.358e-3259.29Adenosylhomocysteinase OS=Ralstonia metallidurans ... [more]
SAHH_RALEH4.358e-3259.29Adenosylhomocysteinase OS=Ralstonia eutropha (stra... [more]
SAHH_PROM34.358e-3258.41Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_DESVV4.358e-3255.26Adenosylhomocysteinase OS=Desulfovibrio vulgaris s... [more]
SAHH_DESVH4.358e-3255.26Adenosylhomocysteinase OS=Desulfovibrio vulgaris (... [more]
SAHH_CUPTR4.358e-3259.29Adenosylhomocysteinase OS=Cupriavidus taiwanensis ... [more]
SAHH_RALSO5.692e-3259.29Adenosylhomocysteinase OS=Ralstonia solanacearum G... [more]
SAHH_PROMM5.692e-3257.52Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011D03EF RVDevelop1 Citrus clementina cDNA clone C32011D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920658 ID=FC920658; Name=FC920658; organism=Citrus clementina; type=EST; length=459bp
TCTCTTCCTTCTTTCTTATAGATGCATCAATACTATTAATCAACCATGGC
GTTTGCATTCGAGAAATCCGCTAGGCGGACTTGAATTCAAGGATGAAGGA
TCTGTGCACCAGGCTGACTTTCGGGCCACACGAAATCGAGTTGGCCGAAG
TCGAAATGCCGGGGCTCATGGCTTGCCGCGCCGAGTTCGGCCCTTCACAG
CCTTTCAAAGGAGCCAAGATCACCGGTTCACTCCACATGACCATCCAGAC
AGCCGTCCTCATCGAGACACTCACCGCTCTCGGCGACGAAGTCCGCTGGT
GCTCCTGCAACATCTTCTCAACCCAAGACCACGCGGCCGCCGCCATCGCA
CGTGACTCCGCCTCCGTCTTTGCCTGGAAGGGTGAGACCCTCCAGGAGTA
CTGGTGGTGCACGGAGAAAGCCCTGGACTGGGGTCCCGGCGGCGGCCCAG
ATCTCATCG
back to top