FC920661

Overview
NameFC920661
Unique NameFC920661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12205 contig Ccv1_Contig12205:5..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_VACCP (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain L-IVP) GN=F14 PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.715e-88
Identity = 152/201 (75.62%), Postives = 173/201 (86.07%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EP+LAPNP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  +T DEK+F+ HVLAFFAASDGIV ENLA RF TEVQ+ EAR FYGF++AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + ERLIAFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKVTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 202          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_DANRE (Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio GN=rrm2 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.372e-87
Identity = 154/209 (73.68%), Postives = 179/209 (85.65%), Query Frame = 1
Query:   55 KMPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            K  ++ EEPLL  NP RF +FPIQY  IW+MYKKAEASFWTAEEVDLS+DL+HW++L  +E++F++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKDS E+  LF+AIET+PCV KKA WALNWI D +  + ER++AFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   60 KKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIGDKNARYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 268          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_VARV (Ribonucleoside-diphosphate reductase small chain OS=Variola virus GN=F4L PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.056e-87
Identity = 152/201 (75.62%), Postives = 171/201 (85.07%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EP+LA NP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  LT DEK+F+ HVLAFFAASDGIV ENLA RF  EVQ+ EAR FYGFQ+AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + ERLIAFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 202          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_SPISO (Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 8.892e-87
Identity = 159/236 (67.37%), Postives = 186/236 (78.81%), Query Frame = 1
Query:    1 PKK*KSNISLFSRISALTKMP---------SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            PKK    I+ F R +  T +          S   EPLLA NP RF + PIQY  IW+MYKKAEASFWTAEEVDLS+D+ HWE+L  +EKHF++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKD  E++ LF+AIET+PCV +KA WA+ WI D S ++AER++AFA VEGIFFSGSF +IFWLKKRG+MPG+TFSNELISRDEGLHCD
Sbjct:   28 PKKVLGEITNFQRSTQKTPLKQEIKPVVKKSQQVEPLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAMRWINDDSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDEGLHCD 263          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_MACFA (Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca fascicularis GN=RRM2 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.161e-86
Identity = 150/207 (72.46%), Postives = 176/207 (85.02%), Query Frame = 1
Query:   61 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            P + +EPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWE+L  +E++F++HVLAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQIA+ENIHSEMYSLL++TYIKD  E+  LF+AIET+PCV KKA WAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   65 PGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVEKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 271          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens GN=RRM2 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.161e-86
Identity = 150/207 (72.46%), Postives = 176/207 (85.02%), Query Frame = 1
Query:   61 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            P + +EPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWE+L  +E++F++HVLAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQIA+ENIHSEMYSLL++TYIKD  E+  LF+AIET+PCV KKA WAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   65 PGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 271          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_DICDI (Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium discoideum GN=rnrB-1 PE=2 SV=2)

HSP 1 Score: 313.538 bits (802), Expect = 6.372e-85
Identity = 149/202 (73.76%), Postives = 171/202 (84.65%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EP+L  N DRF +FPI+YP IW MYKKA AS W AEE+DL  D   WE  LT +E+HF++HVLAFFAASDGIV ENLA RFM+EVQ+ EAR FYGFQIAIENIHSE YSLL+ETYIKD   K++LF+AIET+PC+ KKA WAL WI+ S++FAERL+AFA VEGIFFSGSFC+IFWLKKRGLM G+TFSNELISRDEGLHCD
Sbjct:   12 EPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKDKQTKDKLFNAIETIPCIKKKAEWALRWINDSDSFAERLVAFAAVEGIFFSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCD 213          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_TRYBB (Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma brucei brucei GN=RNR2 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.162e-84
Identity = 143/202 (70.79%), Postives = 164/202 (81.19%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EEPLL  NPDR+ +FPI+YP IW+ YK+AE+S WT EE+DL  D+  WE L   E+HF+ HVLAFFAASDGIVLENLA RFM EVQV E R FYGFQIA+ENIHSE YS+L++TY+ D DEK RL HAI T+PC+ KKA WA+ WI    +F  RL+AFA VEGIFFSGSFCAIFWLKKRGLMPG+TFSNELISRDEGLH D
Sbjct:   16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTSFPTRLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTD 217          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2B_MACFA (Ribonucleoside-diphosphate reductase subunit M2 B OS=Macaca fascicularis GN=RRM2B PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.202e-83
Identity = 149/203 (73.40%), Postives = 170/203 (83.74%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EEPLL  +  RF +FPIQYP IW+MYK+A+ASFWTAEEVDLS+DL HW  L ADEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VEGIFFSGSF AIFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCD 233          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2B_PONAB (Ribonucleoside-diphosphate reductase subunit M2 B OS=Pongo abelii GN=RRM2B PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.570e-83
Identity = 148/203 (72.91%), Postives = 170/203 (83.74%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EEPLL  +  RF +FPIQYP IW+MYK+A+ASFWTAEEVDLS+DL HW  L ADEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VEG+FFSGSF AIFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCD 233          
The following BLAST results are available for this feature:
BLAST of FC920661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RIR2_VACCP4.715e-8875.62Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DANRE1.372e-8773.68Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_VARV3.056e-8775.62Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_SPISO8.892e-8767.37Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_MACFA1.161e-8672.46Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_HUMAN1.161e-8672.46Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_DICDI6.372e-8573.76Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_TRYBB3.162e-8470.79Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2B_MACFA1.202e-8373.40Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_PONAB1.570e-8372.91Ribonucleoside-diphosphate reductase subunit M2 B ... [more]

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Properties
Property NameValue
Genbank descriptionC32011D06EF RVDevelop1 Citrus clementina cDNA clone C32011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920661 ID=FC920661; Name=FC920661; organism=Citrus clementina; type=EST; length=679bp
CCAAAGAAATAGAAATCAAACATCTCTCTATTCTCCCGAATTAGTGCGCT
TACCAAAATGCCCTCGATTCCCGAAGAGCCGCTCCTAGCCCCAAATCCCG
ATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTAC
AAGAAAGCCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATCTTTCGCA
AGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCA
CGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAAC
CTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTT
CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGC
TGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTT
CACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACGTGGGCGTT
AAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATTAATCGCGTTTG
CTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGG
CTCAAAAAGCGCGGGTTAATGCCGGGGATTACATTCTCAAACGAGTTGAT
CTCGCGAGATGAGGGTCTCCACTGCGATT
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