FC920661

Overview
NameFC920661
Unique NameFC920661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12205 contig Ccv1_Contig12205:5..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2B_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 B OS=Homo sapiens GN=RRM2B PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.570e-83
Identity = 148/203 (72.91%), Postives = 170/203 (83.74%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EEPLL  +  RF +FPIQYP IW+MYK+A+ASFWTAEEVDLS+DL HW  L ADEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VEG+FFSGSF AIFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCD 233          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2B_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus GN=Rrm2b PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.497e-83
Identity = 148/203 (72.91%), Postives = 169/203 (83.25%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EEPLL  +  RF +FPIQYP IW MYK+A+ASFWTAEEVDLS+DL HW  L +DEK+F++H+LAFFAASDGIV ENL  RF  EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D  ++  LF+AIET+P V KKA WAL WI D   TF ER++AFA VEGIFFSGSF AIFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   31 EEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCD 233          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_DROME (Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila melanogaster GN=RnrS PE=1 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 3.866e-82
Identity = 145/202 (71.78%), Postives = 167/202 (82.67%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EPLL  NP RF +FPIQY  IW+MYKKAEASFWT EEVDLS+DL  W  L  DE+HF++HVLAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQIA+EN+HSEMYS+L++TYI+D  ++  LF+AIET+P V +KA WAL+WI   S  F ER+IAFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   74 EPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 275          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_NEUCR (Ribonucleoside-diphosphate reductase small chain OS=Neurospora crassa GN=rnr-2 PE=3 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.506e-81
Identity = 146/213 (68.54%), Postives = 171/213 (80.28%), Query Frame = 1
Query:   46 ALTKMPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            A T  P    EPLL  NP RF +FPI+Y +IW+MYKKAEASFWTAEE+DLS+DL  W   L  DEK F++H+LAFFAASDGIV ENL  RF  EVQ+ EAR FYGFQI +ENIHSE YSLL++TYIK+  ++  LF+AI+T+PC+ KKA WAL WI D S TFA+RL+AFA VEGIFFSG+F +IFWLKKRGLMPG+TFSNELISRDEGLH D
Sbjct:   67 APTLKPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSSTFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTD 279          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_SWPVK (Ribonucleoside-diphosphate reductase small chain OS=Swinepox virus (strain Kasza) GN=C14L PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.053e-79
Identity = 137/201 (68.16%), Postives = 167/201 (83.08%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EP+L  +  RF +FPI+Y  IW+MYK++ ASFWT EEVDLS+DL  W+ LT DEK+F+ H+LAFFA+SDGIV ENLA RF  +VQ +EAR FYGFQIA+ENIHSEMYSLL++TY++D+ EK  LF+AIET+ CV KKA WA  WI  ++ + ER++AFA VEGIFFSGSF AIFW+KKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDKLTKDEKYFIKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIETMECVKKKADWARKWISSNKVYGERVVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCD 202          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_LEIAM (Ribonucleoside-diphosphate reductase small subunit OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.063e-79
Identity = 135/202 (66.83%), Postives = 161/202 (79.70%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EEPL   NP R+ +FPIQY  IW  YK+ E+  WT EE+DL  D++ W  L   E+HF+ HVLAFFA SDGIV+ENLA RFM++V+V EARAFYGFQ+ +ENIHSE YS+LL+TYI DS+EK RL HAI+T+PC+ KKA W + WI  S +F +RLI FA VEGIFFSGSFCA+FWLKKRGLMPG+TFSNELISRDEGLH D
Sbjct:   24 EEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIGSSASFQQRLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTD 225          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_YLDV (Ribonucleoside-diphosphate reductase small chain OS=Yaba-like disease virus GN=20L PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.824e-79
Identity = 140/202 (69.31%), Postives = 167/202 (82.67%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EP+L P  +++ +FPI Y  IW+MYKKA ASFWT EEVDLS+D   W  L+ +EK+F+ H+LAFFAASDGIV ENLA RF +EVQ++EAR FYGFQIA+ENIHSEMYSLL++TYI DS EKN LF+AIE + CV +KA WA  WI+  + T+ ERL+AFA VEGIFFSGSF AIFW+KKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    6 EPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIENMNCVKQKANWAKKWIESKNRTYGERLVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCD 207          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_ENCCU (Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon cuniculi GN=ECU06_0730 PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.287e-77
Identity = 139/202 (68.81%), Postives = 165/202 (81.68%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            E LL P  +RF + PI+Y  IW+MYKKAE+SFWT EEV L +D+  W  L A E+HF+++VLAFFAASDGIV  NL  RF TEV+V EAR FYGFQ+AIENIHSEMYSLL++TYI+D+DEKN LF AI T+P V +KA WA+ WI D +  FA RL+AFACVEGIFFSG+F +IFWLKKRGLMPG+TFSNELISRDEGLHC+
Sbjct:    8 ELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNAKERHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYIRDNDEKNFLFDAIRTIPSVKEKADWAIRWIEDKNSDFATRLVAFACVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCE 209          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_PLAF4 (Ribonucleoside-diphosphate reductase small chain OS=Plasmodium falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.744e-77
Identity = 140/225 (62.22%), Postives = 170/225 (75.56%), Query Frame = 1
Query:   16 SNISLFSR----ISALTKMPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            S I +FS+     S L K   I E+ +L    DRF ++PI YP +W+ YKKAEASFWTAEE+DLS DL+ +E L  +EKHF+ HVLAFFAASDGIVLENLA +F+ EVQ+ EA+ FY FQIA+ENIHSE YSLL++ YIKD  E+  LFHAIE +P V  KA WA  WI+ + +FAER++A ACVEGI FSGSFCAIFW KK+  + G+TFSNELISRDEGLH D
Sbjct:    8 SRIPIFSKQEREFSDLQKGKEINEK-ILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTD 231          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_CAEEL (Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis elegans GN=rnr-2 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.609e-74
Identity = 134/203 (66.01%), Postives = 160/203 (78.82%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            +EP+L    +RF +FP+++  IW  YKKA ASFWT EEVDL +D+  WE +  DE++F++ +LAFFAASDGIV ENL  RF  EVQV+EAR FYGFQIAIENIHSEMYS L+ETYI+D  E+N LF+A++    + KKA WAL WI D   +FAERLIAFA VEGIFFSGSF +IFWLKKRGLMPG+T SNELISRDEGLH D
Sbjct:   61 DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIRDETERNTLFNAVDEFEFIKKKADWALRWISDKKASFAERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRD 263          
The following BLAST results are available for this feature:
BLAST of FC920661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RIR2B_HUMAN1.570e-8372.91Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_MOUSE3.497e-8372.91Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2_DROME3.866e-8271.78Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_NEUCR2.506e-8168.54Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_SWPVK1.053e-7968.16Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_LEIAM3.063e-7966.83Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_YLDV6.824e-7969.31Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_ENCCU1.287e-7768.81Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_PLAF43.744e-7762.22Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_CAEEL6.609e-7466.01Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC32011D06EF RVDevelop1 Citrus clementina cDNA clone C32011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920661 ID=FC920661; Name=FC920661; organism=Citrus clementina; type=EST; length=679bp
CCAAAGAAATAGAAATCAAACATCTCTCTATTCTCCCGAATTAGTGCGCT
TACCAAAATGCCCTCGATTCCCGAAGAGCCGCTCCTAGCCCCAAATCCCG
ATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTAC
AAGAAAGCCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATCTTTCGCA
AGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCA
CGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAAC
CTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTT
CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGC
TGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTT
CACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACGTGGGCGTT
AAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATTAATCGCGTTTG
CTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGG
CTCAAAAAGCGCGGGTTAATGCCGGGGATTACATTCTCAAACGAGTTGAT
CTCGCGAGATGAGGGTCTCCACTGCGATT
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