FC920661

Overview
NameFC920661
Unique NameFC920661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12205 contig Ccv1_Contig12205:5..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_HHV1K (Ribonucleoside-diphosphate reductase small chain OS=Human herpesvirus 1 (strain KOS) GN=UL40 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 57/196 (29.08%), Postives = 93/196 (47.45%), Query Frame = 1
Query:   91 PNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETV--PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            P+P+R+  +  Q P I  +   +  + W   E+    D      L+  E  F   + AF +A+D +V ENL G      +  +   +Y  Q  IE  HS +Y+++      ++D+  R + A  T+  P +  K  W    +    +  E+ I    +EGIFF+ SF AI +L+   L+     SN+LISRDE +H
Sbjct:   32 PDPERY-FYTSQCPDINHLRSLSILNRWLETELVFVGDEEDVSKLSEGELSFYRFLFAFLSAADDLVTENLGG-LSGLFEQKDILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREYVA-GTINHPAIRAKVDWLEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVH 224          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_BHV1C (Ribonucleoside-diphosphate reductase small chain OS=Bovine herpesvirus 1.1 (strain Cooper) GN=UL40 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 54/189 (28.57%), Postives = 89/189 (47.09%), Query Frame = 1
Query:  115 FPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLA--GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLL-LETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            +  + P +  +   + A+ W   E  L+ D +    L+  E  F   + AF +A+D +V  NL       T+  +     +Y  Q +IE +HS +YS + L  +  D+  +          P V +K  W    +  +E+ AE+ +    +EGIFFS SF AI +L+   L      +N+LISRDE +H
Sbjct:   18 YETECPDLDHLRSLSVANRWLETEFPLADDAKDVARLSGAELEFYRFLFAFLSAADDLVNVNLGDLSELFTQKDILH---YYIEQESIEVVHSRVYSAIQLLLFRNDAVARAGYVEGALGDPAVRRKVDWLERRVAAAESVAEKYVLMILIEGIFFSSSFAAIAYLRTHNLFVVTCQTNDLISRDEAVH 203          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_EHV1B (Ribonucleoside-diphosphate reductase small chain OS=Equine herpesvirus 1 (strain Ab4p) GN=20 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 1
Query:  130 PQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLL-LETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            P I  +   + A+ W   ++ +S DL+    LT  E+ F   + AF +A+D +V  NL G         +   +Y  Q +IE  HS +YS + L  +  D+  + R   +I     + +K  W    +    + AE+ I    +EG+FF+ SF +I +L+   L      SN+LISRDE +H
Sbjct:   28 PDIEHLRSLSVANRWLDTDLPISDDLKDVAKLTPAEREFYRFLFAFLSAADDLVNLNL-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDAAARARYVASIIGDAAIGRKVAWLQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHNLFVVTCQSNDLISRDEAIH 208          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_SUHVK (Ribonucleoside-diphosphate reductase small chain OS=Suid herpesvirus 1 (strain Kaplan) GN=RR2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 52/186 (27.96%), Postives = 87/186 (46.77%), Query Frame = 1
Query:  124 QYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAG--RFMTEVQVAEARAFYGFQIAIENIHSEMYSLL-LETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            Q P +  +   + A+ W   ++ L  D +   AL+  E  F   + AF +A+D +V  NL       T+  +     +Y  Q  IE +HS +YS + L  +  D+  + R   A      + +K  W  + +    + AE+ +    +EGIFF+ SF +I +L+   L      SN+ ISRDE +H
Sbjct:    8 QCPDMDHLRSLSVANRWLETDLPLGDDAKDVAALSEPELEFYRFLFAFLSAADDLVNVNLGSLSELFTQKDILH---YYIEQECIEVVHSRVYSAIQLMLFRGDAAARERYVRAALRDEAIRRKVEWLDSRVAECASVAEKYLLMILIEGIFFASSFASISYLRTHNLFVVTCQSNDFISRDEAIH 190          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_EHV4 (Ribonucleoside-diphosphate reductase small chain OS=Equine herpesvirus 4 (strain 1942) PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = 1
Query:  130 PQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLL-LETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            P I  +   + A+ W   ++ +S DL+    L   E+ F   + AF +A+D +V  NL G         +   +Y  Q +IE  HS +YS + L  +  D+  + R   ++     +  K +W    +   ++ AE+ I    +EG+FF+ SF +I +L+   L      SN+LISRDE +H
Sbjct:   27 PDIEHLRLLSVANRWLDTDLPISDDLKDVAKLAPAEREFYRFLFAFLSAADDLVNLNL-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAIDLKVSWLQAKVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVVTCQSNDLISRDEAIH 207          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_SHV21 (Ribonucleoside-diphosphate reductase small chain OS=Saimiriine herpesvirus 2 (strain 11) GN=60 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 48/178 (26.97%), Postives = 88/178 (49.44%), Query Frame = 1
Query:  142 EMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHA-IETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            E+ K+   + W   +V L  D+   + L   +  F   +  F   ++ +V  N+    +++    +   +Y  Q+A+ENIH ++Y+ +L    K++  +   +   I     + +K  W    +  +   AE+++ F  VEGIFF  SF +I   + RG+M GI  +N+ I+RDE LH
Sbjct:   18 ELTKETWKNRWFPSQVPLQGDVCCVDMLNERDLEFYKFLFTFLGMAEKLVNINIED-LLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYACDIMNDSALQEKLRWLNGRVTEASDKAEKILLFLLVEGIFFISSFFSIGLFRVRGIMNGICLANDYIARDEMLH 194          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_TREPA (Ribonucleoside-diphosphate reductase subunit beta OS=Treponema pallidum GN=nrdB PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 51/191 (26.70%), Postives = 89/191 (46.60%), Query Frame = 1
Query:  121 IQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENL--AGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKK---ATWALNWIDGSETFAERLIAFA--CVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            ++YP + + Y++A  +FW  EE+++S D++ +  L+A EK     +L+F    D I   NL   G+++T  ++        FQ   E +HS+ YS +L+T     +  + L+   +    +A+          + D     A   +A A   +EGI+F   F   + L +   MPG       I+RDE  H
Sbjct:   41 MKYPWVSKWYRQAMNNFWIPEEINMSSDVQDYRNLSAIEKTAYDKILSFLIFLDSIQTANLPNIGQYITANEINLCLTIQAFQ---EAVHSQSYSYMLDTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALLKVAIANYVLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTH 228          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_CHLTR (Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia trachomatis GN=nrdB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 50/203 (24.63%), Postives = 90/203 (44.33%), Query Frame = 1
Query:  112 MFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            + PI+Y   WE Y    A+ W   E+ + +D+  W++  L+ DE+  +   L FF+ ++ +V  N+       V   EAR +   Q   E +H+  +  + E+   D  E   +F+A      +  K  + +             + ++G + F + L+ +  + EGIFF   F  I    ++  M GI    + I RDE +H
Sbjct:   31 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIH 230          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_CHLMU (Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia muridarum GN=nrdB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 50/203 (24.63%), Postives = 90/203 (44.33%), Query Frame = 1
Query:  112 MFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            + PI+Y   WE Y    A+ W   E+ + +D+  W++  L+ DE+  +   L FF+ ++ +V  N+       V   EAR +   Q   E +H+  +  + E+   D  E   +F+A      +  K  + +             + ++G + F + L+ +  + EGIFF   F  I    ++  M GI    + I RDE +H
Sbjct:   31 LVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELWKSNVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIH 230          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_CHLPN (Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia pneumoniae GN=nrdB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 50/203 (24.63%), Postives = 89/203 (43.84%), Query Frame = 1
Query:  112 MFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKK-------------ATWALNWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLH 672
            + PI+Y   WE Y    A+ W   EV +++D+  W++  L+ DE+  +   L FF+ ++ +V  N+       +   EAR +   Q   E +H+  +  + E+   D  E   +F+A      +  K               +++   +G   F + L+ +  + EGIFF   F  I    ++  M GI    + I RDE +H
Sbjct:   31 LVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKSDELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEGE---VFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIH 230          
The following BLAST results are available for this feature:
BLAST of FC920661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RIR2_HHV1K1.186e-1429.08Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_BHV1C1.186e-1428.57Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EHV1B2.023e-1429.67Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_SUHVK1.311e-1327.96Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_EHV41.311e-1328.57Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_SHV216.507e-1326.97Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_TREPA2.472e-1226.70Ribonucleoside-diphosphate reductase subunit beta ... [more]
RIR2_CHLTR9.395e-1224.63Ribonucleoside-diphosphate reductase subunit beta ... [more]
RIR2_CHLMU9.395e-1224.63Ribonucleoside-diphosphate reductase subunit beta ... [more]
RIR2_CHLPN6.090e-1124.63Ribonucleoside-diphosphate reductase subunit beta ... [more]

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Properties
Property NameValue
Genbank descriptionC32011D06EF RVDevelop1 Citrus clementina cDNA clone C32011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920661 ID=FC920661; Name=FC920661; organism=Citrus clementina; type=EST; length=679bp
CCAAAGAAATAGAAATCAAACATCTCTCTATTCTCCCGAATTAGTGCGCT
TACCAAAATGCCCTCGATTCCCGAAGAGCCGCTCCTAGCCCCAAATCCCG
ATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTAC
AAGAAAGCCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATCTTTCGCA
AGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCA
CGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAAC
CTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTT
CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGC
TGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTT
CACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACGTGGGCGTT
AAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATTAATCGCGTTTG
CTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGG
CTCAAAAAGCGCGGGTTAATGCCGGGGATTACATTCTCAAACGAGTTGAT
CTCGCGAGATGAGGGTCTCCACTGCGATT
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