FC920663

Overview
NameFC920663
Unique NameFC920663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:50..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDXL_DICDI (Peroxiredoxin-like protein DDB_G0282517, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0282517 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 42/137 (30.66%), Postives = 71/137 (51.82%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIP--DQGIALRGLFIIDKEESSSTQ 715
            +G+  PDF+ ++   Q    + L   +G  + +   +P DFT +C TE+   +    EFEK N +IL +S DSV  HL W++ D +      + YP+IAD  + ++  YG++ P  D    +R +F I  ++    Q
Sbjct:   35 IGDVVPDFSQDSSVGQ----INLYKTLGDSWGLFVSHPKDFTPICTTELGRLAKLKPEFEKRNCKILALSVDSVKDHLEWMK-DIEETQKVKINYPIIADQDRKVADLYGMIHPNADNTFTVRSVFFISPDKRLRAQ 166          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX6_CHICK (Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGG---LGDLKYPLIADITKSISKSYGVLIPDQ 658
            L+G+ AP+F A+         ++  D++G  + ILF +P DFT VC TE+   +    EF K N +++ +S DSV  HLAW +      G   +  L +P+IAD  + ++   G+L PD+
Sbjct:    5 LLGDEAPNFEADTTQG----GIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFSKRNVKMIALSIDSVPDHLAWSKDINAYNGDQPVEKLPFPIIADKDRELAVKLGMLDPDE 120          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TSA_ONCVO (Putative peroxiredoxin OS=Onchocerca volvulus GN=TSA PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 51/145 (35.17%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  314 GNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT-----DRKSGGLGD---LKYPLIADITKSISKSYGVLIPDQ------GIALRGLFIIDKEES 703
            GN  PDF AE   ++ FI+    D+IGK  + ILF +P DFT VC TE+        EF+K N +++G+S DS  SH  W          K  G      L YP+IAD  +S++   G++ PD+       +  R +FII  +++
Sbjct:    8 GNKFPDFQAET--NEGFIS-SFYDWIGKDSWAILFSHPRDFTPVCTTELARLVQLAPEFKKRNVKLIGLSCDSADSHSKWADDILALYKMKCVGCDSEKKLPYPIIADEDRSLATELGMMDPDERDEKGNTLTARCVFIIGSDKT 149          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: REHY_MAIZE (1-Cys peroxiredoxin PER1 OS=Zea mays GN=PER1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 37/124 (29.84%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGG--------LGDLKYPLIADITKSISKSYGVLIPDQ 658
            +G+T P+   ++   +    +++ DY+G  Y I+F +P DFT VC TE+ A +    EFEK   ++LG+S D V SH  W +     GG           + +P++AD  +   +   ++ PD+
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDYVGDGYAIIFSHPADFTPVCTTEMAAMAGYAKEFEKRGVKLLGISCDDVESHRQWTKDVEAYGGKQQQQQATTTKVTFPILADPARDAIRQLNMVDPDE 125          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: Y2262_MYCBO (Putative peroxiredoxin Mb2262c OS=Mycobacterium bovis GN=Mb2262c PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 47/130 (36.15%), Postives = 66/130 (50.77%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK--SISKSYGVLIPDQGIALRGLFIIDK 694
            VG TAPDF      DQ    V L  Y G K V+L F+PL FT +C  E+    D   EFE  ++  L +S     +H  W     +SG      +PL++D     ++S++YGV     GIA RG F++D+
Sbjct:    4 VGATAPDFTLR---DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWA---TQSG----FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDR 123          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: Y2238_MYCTU (Putative peroxiredoxin Rv2238c/MT2298 OS=Mycobacterium tuberculosis GN=Rv2238c PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 47/130 (36.15%), Postives = 66/130 (50.77%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK--SISKSYGVLIPDQGIALRGLFIIDK 694
            VG TAPDF      DQ    V L  Y G K V+L F+PL FT +C  E+    D   EFE  ++  L +S     +H  W     +SG      +PL++D     ++S++YGV     GIA RG F++D+
Sbjct:    4 VGATAPDFTLR---DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWA---TQSG----FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDR 123          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH_CHLTE (Probable peroxiredoxin OS=Chlorobium tepidum GN=CT1747 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  305 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIID 691
            PL+G+  P+   +       I   L       + +LF +P DFT VC TE  AF  R   FEK+  +++G+S D VFSH+ WV+  +++  + D+ +P++A     I+   G+L P +G   +R +F+ D
Sbjct:    2 PLLGDDFPELKVQTTHGPMNIPGDLKG----SWFVLFSHPADFTPVCTTEFVAFQQRVEAFEKIGCKLIGMSVDQVFSHIKWVEWIKENLDV-DITFPIVA-ANDRIANKLGMLHPGKGTNTVRAVFVGD 125          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: 1CPX_DIRIM (1-Cys peroxiredoxin OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 51/151 (33.77%), Postives = 75/151 (49.67%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT------------DRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ------GIALRGLFIIDKEES 703
            L+G+  PDF AE   ++ FI     D+IGK  + ILF +P DFT VC TE+        EF K N +++G+S DS  SH  WV              D    G   L +P+IAD  + ++   G++ PD+       +  R +FII  E++
Sbjct:    6 LLGDKFPDFRAET--NEGFIP-SFYDWIGKDSWAILFSHPRDFTPVCTTELARLVQLAPEFNKRNVKLIGLSCDSAESHRKWVDDIMAVCKMKCNDGDTCCSG-NKLPFPIIADENRFLATELGMMDPDERDENGNALTARCVFIIGPEKT 152          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX6_BOVIN (Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGG---LGDLKYPLIADITKSISKSYGVLIP 652
            L+G+ AP+F A     +    ++  DY+G  + ILF +P DFT VC TE+   +    EF K N +++ +S DSV  HLAW +      G      L +P+I D  + ++   G+L P
Sbjct:    6 LLGDEAPNFEANTTIGR----IRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLDP 119          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX6_PIG (Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGG---LGDLKYPLIADITKSISKSYGVLIP----DQG--IALRGLFIIDKEE 700
            L+G+ AP+F A     +    ++  D++G  + ILF +P DFT VC TE+   +    EF K N +++ +S DSV  HLAW +      G      L +P+I D ++ ++   G+L P    +QG  +  R +FI   ++
Sbjct:    6 LLGDEAPNFEANTTIGR----IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQGMPVTARVVFIFGPDK 141          
The following BLAST results are available for this feature:
BLAST of FC920663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PRDXL_DICDI2.085e-1230.66Peroxiredoxin-like protein DDB_G0282517, mitochond... [more]
PRDX6_CHICK2.085e-1234.17Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=... [more]
TSA_ONCVO2.724e-1235.17Putative peroxiredoxin OS=Onchocerca volvulus GN=T... [more]
REHY_MAIZE2.724e-1229.841-Cys peroxiredoxin PER1 OS=Zea mays GN=PER1 PE=2 ... [more]
Y2262_MYCBO4.646e-1236.15Putative peroxiredoxin Mb2262c OS=Mycobacterium bo... [more]
Y2238_MYCTU4.646e-1236.15Putative peroxiredoxin Rv2238c/MT2298 OS=Mycobacte... [more]
TDXH_CHLTE4.646e-1232.31Probable peroxiredoxin OS=Chlorobium tepidum GN=CT... [more]
1CPX_DIRIM1.765e-1133.771-Cys peroxiredoxin OS=Dirofilaria immitis PE=2 SV... [more]
PRDX6_BOVIN3.011e-1133.90Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3[more]
PRDX6_PIG6.708e-1131.43Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC32011D09EF RVDevelop1 Citrus clementina cDNA clone C32011D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920663 ID=FC920663; Name=FC920663; organism=Citrus clementina; type=EST; length=719bp
GGCAACAGATAGCCACACTTTGCTTTTCCCCGTTCGTTGACTCCAGCTGA
ACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCT
GCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTC
TTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCG
GCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCC
CGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAAT
ACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTT
TCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAA
TATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCAC
AGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACA
CAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGG
GTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACT
AATTGCTGATATCACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCC
CTGATCAGGGAATTGCATTGAGAGGACTCTTTATTATTGACAAAGAGGAG
TCATCCAGCACTCAACCAT
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