FC920663

Overview
NameFC920663
Unique NameFC920663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.450e-37
Identity = 75/128 (58.59%), Postives = 96/128 (75.00%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G+ AP F A AV  D +F ++ L+DY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PLI+D  ++I++ YGVL  D+GI+ RGLFIID
Sbjct:    8 IGHRAPQFKATAVMPDGQFKDISLADYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIID 134          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX1_DROME (Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 74/133 (55.64%), Postives = 96/133 (72.18%), Query Frame = 2
Query:  305 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEES 703
            P +   AP FA  AV +  F ++KLSDY GK Y++LFFYPLDFTFVCPTEI AFS+   EF K+N E++G STDS F+HLAW+ T RK GGLG +  PL+AD +  +++ YGVL  + GI  RGLFIID +++
Sbjct:    2 PQLQKPAPAFAGTAVVNGVFKDIKLSDYKGK-YLVLFFYPLDFTFVCPTEIIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLADKSMKVARDYGVLDEETGIPFRGLFIIDDKQN 133          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX1_MOUSE (Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 75/128 (58.59%), Postives = 96/128 (75.00%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  AP+F A AV  D +F ++ LS+Y GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PLI+D  ++I++ YGVL  D+GI+ RGLFIID
Sbjct:    8 IGYPAPNFKATAVMPDGQFKDISLSEYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIID 134          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX4_HUMAN (Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.586e-36
Identity = 72/127 (56.69%), Postives = 90/127 (70.87%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +   AP +   AV D EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+T  ISK YGV + D G  LRGLFIID
Sbjct:   81 ISKPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIID 206          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX1_CRIGR (Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.532e-36
Identity = 74/128 (57.81%), Postives = 96/128 (75.00%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  AP+F A AV  D +F ++ LS+Y GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PL++D  ++I++ YGVL  D+GI+ RGLFIID
Sbjct:    8 IGYPAPNFKATAVMPDGQFRDICLSEYRGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIID 134          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDX_ECHGR (Thioredoxin peroxidase OS=Echinococcus granulosus GN=TPX PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 75/128 (58.59%), Postives = 91/128 (71.09%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +VG  AP F  +A+ D E  +V LSDY GK YVILFFYP+DFTFVCPTEI AF+DR  EF +   ++L  STDS + HLAW    RK GG+  ++ P++AD    IS+ YGVLI DQGIALRGLFIID
Sbjct:    4 VVGKLAPSFTCKALVDGELKDVSLSDYRGK-YVILFFYPMDFTFVCPTEIIAFNDRADEFHQRGCQLLACSTDSGYCHLAWNNVSRKEGGVQGMRIPMLADTNHKISRDYGVLIEDQGIALRGLFIID 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX4_BOVIN (Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG +  PL+AD+   ISK YGV + D G  LRGLFIID
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYLEDSGHTLRGLFIID 209          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX4_RAT (Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YGV + D G  LRGLFIID
Sbjct:   83 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIID 208          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX4_MOUSE (Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YGV + D G  LRGLFIID
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIID 209          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDX2_BRUMA (Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 73/127 (57.48%), Postives = 90/127 (70.87%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  AP+F   AV + +F  + L  + GK YV+L FYPLDFTFVCPTEI AFSDR  EF++L+  ++  STDS FSHLAWV TDRK GGLG +  P++A     IS++YGVL  D GIA RGLFIID
Sbjct:   10 IGQPAPNFKTTAVVNGDFKEISLGQFKGK-YVVLLFYPLDFTFVCPTEIIAFSDRIAEFKQLDVAVMACSTDSHFSHLAWVNTDRKMGGLGQMNIPILAYTNHVISRAYGVLKEDDGIAYRGLFIID 135          
The following BLAST results are available for this feature:
BLAST of FC920663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PRDX1_BOVIN5.450e-3758.59Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]
PRDX1_DROME9.296e-3755.64Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafr... [more]
PRDX1_MOUSE1.214e-3658.59Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1[more]
PRDX4_HUMAN1.586e-3656.69Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1[more]
PRDX1_CRIGR3.532e-3657.81Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=... [more]
TDX_ECHGR6.025e-3658.59Thioredoxin peroxidase OS=Echinococcus granulosus ... [more]
PRDX4_BOVIN1.342e-3555.91Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1[more]
PRDX4_RAT1.753e-3555.12Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2... [more]
PRDX4_MOUSE1.753e-3555.12Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1[more]
TDX2_BRUMA2.990e-3557.48Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2... [more]

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Properties
Property NameValue
Genbank descriptionC32011D09EF RVDevelop1 Citrus clementina cDNA clone C32011D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920663 ID=FC920663; Name=FC920663; organism=Citrus clementina; type=EST; length=719bp
GGCAACAGATAGCCACACTTTGCTTTTCCCCGTTCGTTGACTCCAGCTGA
ACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCT
GCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTC
TTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCG
GCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCC
CGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAAT
ACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTT
TCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAA
TATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCAC
AGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACA
CAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGG
GTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACT
AATTGCTGATATCACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCC
CTGATCAGGGAATTGCATTGAGAGGACTCTTTATTATTGACAAAGAGGAG
TCATCCAGCACTCAACCAT
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