FC920663

Overview
NameFC920663
Unique NameFC920663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:50..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: YCF42_ODOSI (Putative peroxiredoxin ycf42 OS=Odontella sinensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 69/131 (52.67%), Postives = 95/131 (72.52%), Query Frame = 2
Query:  305 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            P +G T P+F    V+ +    ++LSDY GKKYVILFFYP +FT + PTE+   SDR +EF KL+T+IL +S DS FSHL ++  +R+ GGL DL YPL++D+T++I++ Y VL  D+G+A  GLFIIDKE
Sbjct:    5 PKIGKTPPNFLTIGVYKKRLGKIRLSDYRGKKYVILFFYPANFTAISPTELMLLSDRISEFRKLSTQILAISVDSPFSHLQYLLCNREEGGLEDLNYPLVSDLTQTITRDYQVL-TDEGLAFPGLFIIDKE 134          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDX1_CAEEL (Probable peroxiredoxin prdx-3 OS=Caenorhabditis elegans GN=prdx-3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.256e-33
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 2
Query:  263 SRKSFVVKASVEIPPL-VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +R+    +A + + PL   NT P F   AV D +F  +   DY GK ++++FFYPLDFTFVCPTEI A+ DR  EF  L  E++  S DS FSHLAWV T RK GGLGD+  PL+AD  K I+ S+GVL  + G++ RGLF+ID
Sbjct:   18 TRQLSTSRALLSLRPLGPKNTVPAFKGTAVVDGDFKVISDQDYKGK-WLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLID 160          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TSA1_SCHPO (Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN=tpx1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 69/127 (54.33%), Postives = 91/127 (71.65%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            +G  APDF   AV +  F  +KL+DY GK +V L FYPLDFTFVCPTEI AFS+  ++F + N +++  STDS +SHLA++ T RK GGLG +  PL+AD +  +S+ YGVLI D G+A RGLF+ID
Sbjct:    5 IGKPAPDFKGTAVVNGAFEEIKLADYKGK-WVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLFLID 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: R20K_CLOPA (Putative peroxiredoxin in rubredoxin operon OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.774e-33
Identity = 71/132 (53.79%), Postives = 90/132 (68.18%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFD--QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            LVG  AP+F  +AV    + F  VKL DY GK ++++FFYPLDFTFVCPTEIT FS R  EF  L  E+L VS DS +SH  W+  D K GGLG + +P+ +D T  +S  YG+ I ++GI+LRGLFIID E
Sbjct:    4 LVGKPAPEFEMKAVKGDGRGFTEVKLGDYKGK-WLVMFFYPLDFTFVCPTEITGFSKRAEEFRDLKAELLAVSCDSQYSHETWINQDIKQGGLGKINFPIASDKTTEVSTKYGIQIEEEGISLRGLFIIDPE 134          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDX_TRYBR (Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.042e-32
Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQ-EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEES 703
            + + AP F   A+     F  V L+ Y GK +V+LFFYPLDFTFVCPTEI  FSDR  EF  ++ E++  S DS FSHLAW   +RK GGLG +  P++AD TKSI K+YGVL  + G+A RGLFIID +++
Sbjct:    8 LNHPAPHFNEVALMPNGTFKKVDLASYRGK-WVVLFFYPLDFTFVCPTEICQFSDRVKEFNDVDCEVIACSMDSEFSHLAWTNVERKKGGLGTMNIPILADKTKSIMKAYGVLKEEDGVAYRGLFIIDPQQN 138          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDX_FASHE (Thioredoxin peroxidase OS=Fasciola hepatica PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.279e-32
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 2
Query:  323 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            AP+F+ +AV  +EF  + LSDY GK +VIL FYPLDFTFVCPTEI A SD+  +F + N  ++  STDSV+SHL W + DRK GG+G L +PL+AD   S+S+++GVL  +QG   RG F+ID
Sbjct:    8 APNFSGQAVVGKEFETISLSDYKGK-WVILAFYPLDFTFVCPTEIIAISDQMEQFAQRNCAVIFCSTDSVYSHLQWTKMDRKVGGIGQLNFPLLADKNMSVSRAFGVLDEEQGNTYRGNFLID 129          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDX_ONCMY (Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.004e-32
Identity = 72/129 (55.81%), Postives = 87/129 (67.44%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD-QGIALRGLFIID 691
            +G+ AP F A+AV  D +F ++ +SDY GK YV+ FFYPLDFTFVCPTEI AFSD   EF K+  E++G S DS F HLAW  T RK GGLG +K PL+AD  +SIS  YGV     +     GLFIID
Sbjct:    8 IGHLAPGFTAKAVMPDGQFKDISMSDYRGK-YVVFFFYPLDFTFVCPTEIIAFSDAAEEFRKIGCEVIGASVDSHFCHLAWTNTPRKHGGLGAMKIPLVADTMRSISTDYGVFEGGMRASPTGGLFIID 135          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: PRDX2_PIG (Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.620e-31
Identity = 64/94 (68.09%), Postives = 74/94 (78.72%), Query Frame = 2
Query:  410 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            LFFYPLDFTFVCPTEI AFSDR  EF +L  E+LGVS D   +HLAW+ T RK GGLG LK PL+AD+T+++S  YGVL  D+GIA RGLFIID
Sbjct:    1 LFFYPLDFTFVCPTEIIAFSDRAEEFHQLGCEVLGVSVDXQXTHLAWINTPRKEGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAYRGLFIID 94          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TSA1_YEAST (Peroxiredoxin TSA1 OS=Saccharomyces cerevisiae GN=TSA1 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 69/127 (54.33%), Postives = 83/127 (65.35%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            V   AP F   AV D  F  V L  Y GK YV+L F PL FTFVCPTEI AFS+   +FE+   ++L  STDS +S LAW    RK GGLG +  PL+AD   S+S+ YGVLI ++G+ALRGLFIID
Sbjct:    5 VQKQAPTFKKTAVVDGVFDEVSLDKYKGK-YVVLAFIPLAFTFVCPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIID 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TSA2_YEAST (Peroxiredoxin TSA2 OS=Saccharomyces cerevisiae GN=TSA2 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.437e-29
Identity = 70/127 (55.12%), Postives = 82/127 (64.57%), Query Frame = 2
Query:  311 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIID 691
            V   AP F   AV D  F  + L  Y GK YV+L F PL F+FVCPTEI AFSD   +FE    ++L  STDS +S LAW    RK GGLG +K PL+AD   S+S+ YGVLI  +GIALRGLFIID
Sbjct:    5 VQKQAPPFKKTAVVDGIFEEISLEKYKGK-YVVLAFVPLAFSFVCPTEIVAFSDAAKKFEDQGAQVLFASTDSEYSLLAWTNLPRKDGGLGPVKVPLLADKNHSLSRDYGVLIEKEGIALRGLFIID 130          
The following BLAST results are available for this feature:
BLAST of FC920663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
YCF42_ODOSI5.640e-3452.67Putative peroxiredoxin ycf42 OS=Odontella sinensis... [more]
TDX1_CAEEL1.256e-3350.69Probable peroxiredoxin prdx-3 OS=Caenorhabditis el... [more]
TSA1_SCHPO1.641e-3354.33Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN... [more]
R20K_CLOPA4.774e-3353.79Putative peroxiredoxin in rubredoxin operon OS=Clo... [more]
TDX_TRYBR4.042e-3253.03Thioredoxin peroxidase OS=Trypanosoma brucei rhode... [more]
TDX_FASHE5.279e-3254.47Thioredoxin peroxidase OS=Fasciola hepatica PE=2 S... [more]
TDX_ONCMY9.004e-3255.81Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1[more]
PRDX2_PIG2.620e-3168.09Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 ... [more]
TSA1_YEAST6.453e-3054.33Peroxiredoxin TSA1 OS=Saccharomyces cerevisiae GN=... [more]
TSA2_YEAST1.437e-2955.12Peroxiredoxin TSA2 OS=Saccharomyces cerevisiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32011D09EF RVDevelop1 Citrus clementina cDNA clone C32011D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920663 ID=FC920663; Name=FC920663; organism=Citrus clementina; type=EST; length=719bp
GGCAACAGATAGCCACACTTTGCTTTTCCCCGTTCGTTGACTCCAGCTGA
ACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCT
GCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTC
TTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCG
GCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCC
CGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAAT
ACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTT
TCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAA
TATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCAC
AGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACA
CAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGG
GTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACT
AATTGCTGATATCACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCC
CTGATCAGGGAATTGCATTGAGAGGACTCTTTATTATTGACAAAGAGGAG
TCATCCAGCACTCAACCAT
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