FC920663

Overview
NameFC920663
Unique NameFC920663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:50..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH_METVS (Probable peroxiredoxin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0492 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 47/128 (36.72%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  344 AVFDQEFINVKLSDYIGK-----------KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIID 691
            AV  ++F +V+L    GK           K+ +LF +P DFT VC TE  AF  RY +F +LNTE++G+S D VFSH+ WV+  ++   + D+++P+IAD    ++   G++ P +G   +R +F++D
Sbjct:    2 AVIGEKFPDVELLTTHGKLKLPEHFIEAGKWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRELNTELIGLSIDQVFSHIKWVEWIKEKLDV-DIEFPIIADERGDLAVKLGMISPFKGSNTVRAVFVVD 128          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH1_THETN (Probable peroxiredoxin 1 OS=Thermoanaerobacter tengcongensis GN=TTE0270 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 2
Query:  383 DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIID 691
            DY GK +V LF +P DFT VC TE   F+ +  EF++LNTE++G+S D VFSH+ WV+  + + G+  + +P+IAD    +S   G++ P +G   +R +FI+D
Sbjct:   25 DYAGKWFV-LFSHPADFTPVCTTEFVEFARKAEEFKQLNTELIGLSVDQVFSHIKWVEWIKDNTGV-QIPFPVIADELGRVSNQLGMIHPGKGTNTVRAVFIVD 126          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH_SULSO (Probable peroxiredoxin OS=Sulfolobus solfataricus GN=SSO2121 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 2
Query:  290 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIA-LRGLFIID 691
            S E  PL+G   P+   E +  Q    +KL D    ++ +LF +P DFT VC TE  +F+ +Y EF+KLNTE++G+S DS  SH+ W+    K+  + ++ +P+IAD   +++K  G++      A +R +F++D
Sbjct:    2 SEERIPLIGERFPEM--EVITTQG--RIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWIMWIEKNLKV-EIPFPIIADPMGNVAKRLGMIHAQSSTATVRAVFVVD 131          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH_NANEQ (Probable peroxiredoxin OS=Nanoarchaeum equitans GN=NEQ191 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 39/110 (35.45%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  371 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIIDKE 697
            ++L D+   K+ +LF +P DFT VC TE   F+  Y +F+ +NTE++G+S D VFSH+ W++  ++   + ++ +P+IAD    +++  G++ P +G   +R +FI+D E
Sbjct:   20 MRLPDHYRGKWFVLFSHPADFTPVCTTEFVEFARNYDKFKAMNTELIGLSIDQVFSHIKWIEWIKEKFNV-EIPFPVIADDQGELARMLGMISPYKGTNTVRAVFIVDPE 128          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH1_SULME (Probable peroxiredoxin 1 OS=Sulfolobus metallicus PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 37/100 (37.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  398 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            K++ LF +P DFT VC TE   FS  Y EF++LN E++G+S DS++SH+ W++  ++  G+  + +PLIAD  K +++   ++    G+ +R +F+++ E
Sbjct:   30 KWLFLFAHPADFTPVCTTEFVGFSKVYEEFKRLNVELVGMSVDSIYSHIEWLKDIQERYGI-QVPFPLIADPDKRLARLLDIIDEASGVTIRAVFLVNPE 128          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: YNDH_BACYN (Putative peroxiredoxin in ndh 5'region (Fragment) OS=Bacillus sp. (strain YN-1) PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 43/113 (38.05%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  359 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            EFI V    + G+ + +L FYP DFTFVCPTE+    + Y   ++L  E+   STD+ F+H  W  +   S  +G + Y +I D ++++S+++ VL    G+A RG FIID +
Sbjct:    1 EFIEVSEESFKGQ-WSVLCFYPADFTFVCPTELEDLQNEYAALKELGVEVFSASTDTHFTHKGWHDS---SETIGKITYAMIGDPSQTLSRNFDVLNEVSGLADRGTFIIDPD 109          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH_METMP (Probable peroxiredoxin OS=Methanococcus maripaludis GN=MMP1174 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 40/99 (40.40%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  398 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG-IALRGLFIID 691
            K+ +LF +P DFT VC TE  AF  RY +F +LNTE++G+S D VFSH+ WV+  ++   + D+++P+IAD    ++   G++ P +G   +R +F++D
Sbjct:   31 KWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRELNTELIGLSIDQVFSHIKWVEWIKEKLDV-DIEFPIIADDRGELAVKLGMISPYKGNNTVRAVFVVD 128          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH_METM5 (Probable peroxiredoxin OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0413 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 40/99 (40.40%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  398 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQG-IALRGLFIID 691
            K+ +LF +P DFT VC TE  AF  RY +F  LNTE++G+S D VFSH+ WV+  ++   + D+++P+IAD    ++   G++ P +G   +R +F++D
Sbjct:   31 KWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRSLNTELIGLSIDQVFSHIKWVEWIKEKLDV-DIEFPIIADDRGELAVKLGMISPYKGNNTVRAVFVVD 128          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH_AERPE (Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_2278 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 48/132 (36.36%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  305 PLVGNTAPDFAAEAVFDQEFINVKLSD-YIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIID 691
            PL+G   P+   E   D   I  KL D Y+ + K+ +LF +P DFT VC TE  +F+ RY +F++L  +++G+S DSVFSH+ W +   +  G+  + +P+IAD   ++++  G+L  +     +RG+FI+D
Sbjct:    6 PLIGERFPEM--EVTTDHGVI--KLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVD 132          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAES (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ahpC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 43/113 (38.05%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  359 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            EF  V   D+ G   V+ F YP DF+FVCPTE+    ++Y + ++L   +  VSTD+ F H AW      S  +  L+Y +I D +++I++++ VL  + G+A RG FIID +
Sbjct:   22 EFKEVTQEDFKGSWNVVCF-YPADFSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFVHKAW---HDHSDAISKLEYSMIGDPSQTITRNFDVLDEESGLAQRGTFIIDPD 130          
The following BLAST results are available for this feature:
BLAST of FC920663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
TDXH_METVS3.109e-1636.72Probable peroxiredoxin OS=Methanococcus vannielii ... [more]
TDXH1_THETN3.109e-1642.31Probable peroxiredoxin 1 OS=Thermoanaerobacter ten... [more]
TDXH_SULSO6.926e-1635.56Probable peroxiredoxin OS=Sulfolobus solfataricus ... [more]
TDXH_NANEQ6.926e-1635.45Probable peroxiredoxin OS=Nanoarchaeum equitans GN... [more]
TDXH1_SULME6.926e-1637.00Probable peroxiredoxin 1 OS=Sulfolobus metallicus ... [more]
YNDH_BACYN9.046e-1638.05Putative peroxiredoxin in ndh 5'region (Fragment) ... [more]
TDXH_METMP1.181e-1540.40Probable peroxiredoxin OS=Methanococcus maripaludi... [more]
TDXH_METM51.543e-1540.40Probable peroxiredoxin OS=Methanococcus maripaludi... [more]
TDXH_AERPE1.543e-1536.36Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_... [more]
AHPC_STAES1.543e-1538.05Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionC32011D09EF RVDevelop1 Citrus clementina cDNA clone C32011D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920663 ID=FC920663; Name=FC920663; organism=Citrus clementina; type=EST; length=719bp
GGCAACAGATAGCCACACTTTGCTTTTCCCCGTTCGTTGACTCCAGCTGA
ACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCT
GCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTC
TTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCG
GCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCC
CGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAAT
ACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTT
TCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAA
TATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCAC
AGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACA
CAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGG
GTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACT
AATTGCTGATATCACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCC
CTGATCAGGGAATTGCATTGAGAGGACTCTTTATTATTGACAAAGAGGAG
TCATCCAGCACTCAACCAT
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