FC920663

Overview
NameFC920663
Unique NameFC920663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAEQ (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ahpC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 43/113 (38.05%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  359 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            EF  V   D+ G   V+ F YP DF+FVCPTE+    ++Y + ++L   +  VSTD+ F H AW      S  +  L+Y +I D +++I++++ VL  + G+A RG FIID +
Sbjct:   22 EFKEVTQEDFKGSWNVVCF-YPADFSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFVHKAW---HDHSDAISKLEYSMIGDPSQTITRNFDVLDEETGLAQRGTFIIDPD 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: TDXH1_PICTO (Probable peroxiredoxin 1 OS=Picrophilus torridus GN=PTO0377 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 44/130 (33.85%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  305 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGI-ALRGLFIID 691
            PL+G   P+            N+KL D    K+ +LF +P DFT VC TE  +F+  + +F+KLNTE++G+S DS  SH+ W+   +++  + D+K+P+IAD    ++   G++        +R +FI+D
Sbjct:    6 PLIGEKFPEMEVVTNLG----NIKLPDDFKGKWFVLFSHPGDFTPVCTTEFFSFAKHHDDFKKLNTELIGLSVDSKISHIEWINWIKQNLKI-DIKFPIIADPMGHVATKLGMIQAQSATQTVRAVFIVD 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAAW (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MW2) GN=ahpC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ VL    G+A RG FIID +
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPD 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAAS (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MSSA476) GN=ahpC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ VL    G+A RG FIID +
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPD 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAAR (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MRSA252) GN=ahpC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ VL    G+A RG FIID +
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPD 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAAN (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain N315) GN=ahpC PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ VL    G+A RG FIID +
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPD 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAAM (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ahpC PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ VL    G+A RG FIID +
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPD 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAAC (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain COL) GN=ahpC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ VL    G+A RG FIID +
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPD 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAAB (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ahpC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ VL    G+A RG FIID +
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPD 130          
BLAST of FC920663 vs. ExPASy Swiss-Prot
Match: AHPC_STAA8 (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain NCTC 8325) GN=ahpC PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  308 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKE 697
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ VL    G+A RG FIID +
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPD 130          
The following BLAST results are available for this feature:
BLAST of FC920663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
AHPC_STAEQ2.015e-1538.05Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
TDXH1_PICTO2.632e-1533.85Probable peroxiredoxin 1 OS=Picrophilus torridus G... [more]
AHPC_STAAW4.489e-1536.09Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAS4.489e-1536.09Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAR4.489e-1536.09Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAN4.489e-1536.09Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAM4.489e-1536.09Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAC4.489e-1536.09Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAB4.489e-1536.09Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAA84.489e-1536.09Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionC32011D09EF RVDevelop1 Citrus clementina cDNA clone C32011D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920663 ID=FC920663; Name=FC920663; organism=Citrus clementina; type=EST; length=719bp
GGCAACAGATAGCCACACTTTGCTTTTCCCCGTTCGTTGACTCCAGCTGA
ACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCT
GCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTC
TTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCG
GCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCC
CGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAAT
ACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTT
TCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAA
TATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCAC
AGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACA
CAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGG
GTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACT
AATTGCTGATATCACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCC
CTGATCAGGGAATTGCATTGAGAGGACTCTTTATTATTGACAAAGAGGAG
TCATCCAGCACTCAACCAT
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