FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XYLFA (Chaperone protein dnaK OS=Xylella fastidiosa GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F DA VQ D+ L P+K+         +      + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFGDAEVQKDLDLVPYKITQHDNGDAWVAT---ADAKKLAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSYCK (Chaperone protein dnaK OS=Psychrobacter cryohalolentis (strain K5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+         + +N     K+ A  ++S+ +L KM++ AE YLG  +  AVVTVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   60 NPNNTLFAIKRLIGRRFDDKVVQKDIGMVPYKIAKADNGDAWVEIN----GKKLAPPQVSAEILKKMKKTAEDYLGEAVTEAVVTVPAYFNDSQRQATKDAGKIAGLDV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSYA2 (Chaperone protein dnaK OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF D  VQ D+ + P+K+         + +N     K+ A  ++S+ +L KM++ AE YLG  +  AVVTVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   60 NPNNTLFAIKRLIGRRFDDKVVQKDIGMVPYKIAKADNGDAWVEIN----GKKLAPPQVSAEILKKMKKTAEDYLGEAVTEAVVTVPAYFNDSQRQATKDAGKIAGLDV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPW (Chaperone protein dnaK OS=Pseudomonas putida (strain W619) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+KL P+K++        +    +   K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPHNTLFAVKRLIGRRFEEDVVQKDIKLVPYKIVKANNGDAWV----EASGKEMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_PSEE4 (Chaperone protein dnaK OS=Pseudomonas entomophila (strain L48) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRRF +  VQ D+KL P+K++        +    +   K  A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPHNTLFAVKRLIGRRFDEEVVQKDIKLVPYKIVKASNGDAWV----QASGKDMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_POLSQ (Chaperone protein dnaK OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 53/109 (48.62%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRL+GR+F+D  VQ D+ L P+ +IA       +    +  +++ A +++S+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTIYAVKRLMGRKFTDPEVQKDIGLMPYSIIAADNGDAWV----EARDRKMAPQQVSAEILRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_NITOC (Chaperone protein dnaK OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF +  VQ D+K+ P+K++   AD     V   G  K+ A  E+S+ VL KM++ AE YLG  ++ AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPQNTLYAIKRLIGRRFDEEVVQRDIKMVPYKIVK--ADNGDAWVEATG--KKMAPPEVSANVLRKMKKTAEDYLGEEVEAAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_NEIMF (Chaperone protein dnaK OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NT++ AKRLIG +F D  VQ D++  PF++I        +    K + K+ +  +IS+ VL KM+E AEAYLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAWV----KAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_NEIMB (Chaperone protein dnaK OS=Neisseria meningitidis serogroup B GN=dnaK PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NT++ AKRLIG +F D  VQ D++  PF++I        +    K + K+ +  +IS+ VL KM+E AEAYLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAWV----KAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_NEIMA (Chaperone protein dnaK OS=Neisseria meningitidis serogroup A GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NT++ AKRLIG +F D  VQ D++  PF++I        +    K + K+ +  +IS+ VL KM+E AEAYLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAWV----KAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_XYLFA1.712e-2352.29Chaperone protein dnaK OS=Xylella fastidiosa GN=dn... [more]
DNAK_PSYCK1.712e-2352.29Chaperone protein dnaK OS=Psychrobacter cryohalole... [more]
DNAK_PSYA21.712e-2352.29Chaperone protein dnaK OS=Psychrobacter arcticus (... [more]
DNAK_PSEPW1.712e-2353.21Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]
DNAK_PSEE41.712e-2353.21Chaperone protein dnaK OS=Pseudomonas entomophila ... [more]
DNAK_POLSQ1.712e-2348.62Chaperone protein dnaK OS=Polynucleobacter sp. (st... [more]
DNAK_NITOC1.712e-2355.05Chaperone protein dnaK OS=Nitrosococcus oceani (st... [more]
DNAK_NEIMF1.712e-2352.29Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_NEIMB1.712e-2352.29Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_NEIMA1.712e-2352.29Chaperone protein dnaK OS=Neisseria meningitidis s... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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