FC920664

Overview
NameFC920664
Unique NameFC920664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length339
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_NEIM0 (Chaperone protein dnaK OS=Neisseria meningitidis serogroup C (strain 053442) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            N  NT++ AKRLIG +F D  VQ D++  PF++I        +    K + K+ +  +IS+ VL KM+E AEAYLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAWV----KAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_BORHD (Chaperone protein dnaK OS=Borrelia hermsii (strain DAH) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KR +GRRF +  V  ++K+ P+KV  G        VN    +KQ +  EIS+  L KM+E AEAYLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:   61 NPENTIYSIKRFMGRRFEE--VASEIKMVPYKVEKGQNGDAR--VNISNIKKQMSPPEISAATLTKMKETAEAYLGETVTEAVITVPAYFNDAQRQATKDAGKIAGLDV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_AZOC5 (Chaperone protein dnaK OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP  T F  KRLIGRR+ D +V+ D KL P+KV+   AD     V   G  K+++  +IS+ +L KM+E AE++LG  ++ AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   61 NPERTFFAVKRLIGRRYDDPTVEKDKKLVPYKVVR--ADNGDAWVESDG--KKYSPSQISAFILQKMKETAESFLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK2_COLP3 (Chaperone protein dnaK 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.712e-23
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KRLIGRRF D   Q D+ + PF ++   AD     V  KGE+   A  ++S+ VL KM++ AE +LG T+  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   61 NPENTLYAIKRLIGRRFEDKETQRDIDIMPFGIVK--ADNGDAWVQVKGEK--IAPPQVSAEVLKKMKKTAEDFLGETVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XYLFT (Chaperone protein dnaK OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.235e-23
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F DA VQ D+ L P+K+         +      + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFGDAEVQKDLDLVPYKITQHDNGDAWVAT---ADGKKLAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XYLFM (Chaperone protein dnaK OS=Xylella fastidiosa (strain M12) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.235e-23
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F DA VQ D+ L P+K+         +      + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFGDAEVQKDLDLVPYKITQHDNGDAWVAT---ADGKKLAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_XYLF2 (Chaperone protein dnaK OS=Xylella fastidiosa (strain M23) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.235e-23
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT +  KRLIGR+F DA VQ D+ L P+K+         +      + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:   61 NPKNTFYAVKRLIGRKFGDAEVQKDLDLVPYKITQHDNGDAWVAT---ADGKKLAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_THERP (Chaperone protein dnaK OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dnaK PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.235e-23
Identity = 56/109 (51.38%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT++  KR +GRRF D  VQ  +KL P++V          GV  K  ++ +  +EIS+M+L K+++ AEAYLG T+  AV+TVPAYF+DSQR ATKDAG IAGL V
Sbjct:   61 NPENTIYSIKRFMGRRFDDPEVQRTIKLVPYQVRRAQNG----GVEVKMGDRWYTPQEISAMILQKLKQDAEAYLGETVDKAVITVPAYFDDSQRNATKDAGRIAGLEV 165          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_SHEDO (Chaperone protein dnaK OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.235e-23
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT F  KRLIGRRF D  VQ D+ + PFK+I   AD     V  +G +   A  ++S+ +L KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:   60 NPNNTFFAIKRLIGRRFKDDEVQRDVDIMPFKIIG--ADNGDAWVEQRGNK--MAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 164          
BLAST of FC920664 vs. ExPASy Swiss-Prot
Match: DNAK_ROSDO (Chaperone protein dnaK OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dnaK PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.235e-23
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 2
Query:   11 NPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 337
            NP NT+F  KRLIGRR  DA++  D K  PF VI G        V  KGE+  ++  +IS+ +L KM+E AE+YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:   60 NPDNTIFGVKRLIGRRNDDAALAKDKKNLPFAVIDGGNGDAW--VEAKGEK--YSPSQISAFILGKMKETAESYLGEDVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
The following BLAST results are available for this feature:
BLAST of FC920664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_NEIM01.712e-2352.29Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_BORHD1.712e-2353.21Chaperone protein dnaK OS=Borrelia hermsii (strain... [more]
DNAK_AZOC51.712e-2353.21Chaperone protein dnaK OS=Azorhizobium caulinodans... [more]
DNAK2_COLP31.712e-2354.13Chaperone protein dnaK 2 OS=Colwellia psychrerythr... [more]
DNAK_XYLFT2.235e-2352.29Chaperone protein dnaK OS=Xylella fastidiosa (stra... [more]
DNAK_XYLFM2.235e-2352.29Chaperone protein dnaK OS=Xylella fastidiosa (stra... [more]
DNAK_XYLF22.235e-2352.29Chaperone protein dnaK OS=Xylella fastidiosa (stra... [more]
DNAK_THERP2.235e-2351.38Chaperone protein dnaK OS=Thermomicrobium roseum (... [more]
DNAK_SHEDO2.235e-2354.13Chaperone protein dnaK OS=Shewanella denitrificans... [more]
DNAK_ROSDO2.235e-2355.05Chaperone protein dnaK OS=Roseobacter denitrifican... [more]

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Properties
Property NameValue
Genbank descriptionC32011D10EF RVDevelop1 Citrus clementina cDNA clone C32011D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920664 ID=FC920664; Name=FC920664; organism=Citrus clementina; type=EST; length=339bp
GGTCGCCATGAACCCCACGAACACCGTCTTTGATGCAAAGAGGTTGATTG
GTAGGAGATTCAGCGATGCATCAGTCCAAGGCGATATGAAGCTATGGCCA
TTTAAGGTGATTGCTGGACCTGCTGACAAGCCCATGATTGGTGTTAACTA
CAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGC
TCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAG
AATGCAGTCGTTACTGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGC
CACCAAGGATGCCGGTGTCATTGCTGGGCTTAATGTGAT
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