FC920666

Overview
NameFC920666
Unique NameFC920666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920666_ssr177 microsatellite FC920666_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:70..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51
Identity = 93/116 (80.17%), Postives = 106/116 (91.38%), Query Frame = 3
Query:  342 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            VEGVVTL+QED GPTTV VR+TGLTPG HGFHLHE+GDTTNGC+STG+HFNP  +THGAP+D+VRHAGDLGNIVA ++GVAEATIVDNQI L GP++V+GRA VVHELEDDLGK G
Sbjct:    2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGG 117          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.240e-38
Identity = 74/122 (60.66%), Postives = 85/122 (69.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G +  TQE  GPTTV   V+GL PGPHGFH+H  GDTTNGC+STG HFNP    HGAP DEVRHAGDLGN+    +G A  TIVD QI L GP++++GRA VVH   DDLGK G
Sbjct:    8 LSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.620e-38
Identity = 73/122 (59.84%), Postives = 88/122 (72.13%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L G+  V GV+  TQE+ GPTTV  +++GL PG HGFH+H  GDTTNGC+STG H+NP N  HGAP+DE RHAGDLGN+    +G AE TIVD QI L G  +++GRA VVH   DDLGK G
Sbjct:    8 LSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 73/122 (59.84%), Postives = 86/122 (70.49%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G V   QE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NPN   HGAP+D+VRHAGDLGNI    +G A  TI+D+QI L GPN++VGRA VVH   DDLG+ G
Sbjct:    8 LSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.038e-38
Identity = 72/122 (59.02%), Postives = 89/122 (72.95%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L G ++V+GVV  TQE  GPTTV  +++GL+PG HGFH+H  GDTTNGC+STG HFNP    HGAP D+ RHAGDLGN+    +G  E +I D+QI L GP+++VGRA VVH   DDLGK G
Sbjct:   10 LNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.038e-38
Identity = 74/122 (60.66%), Postives = 85/122 (69.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G V  TQE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+DE RHAGDLGNI    +G A  TI+D+QI L GPN++VGRA VVH   DDLG+ G
Sbjct:    8 LSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37
Identity = 70/116 (60.34%), Postives = 86/116 (74.14%), Query Frame = 3
Query:  339 NVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            NV G++   QE +G PTT++  + GLTPG HGFH+H+YGDTTNGCIS G HFNP N THG P DE+RH GDLGNIVA A+G A   I D  + L GPN+++GR+ VVH  +DDLGK
Sbjct:   13 NVSGIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGK 128          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 72/122 (59.02%), Postives = 88/122 (72.13%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V+G +  TQE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP +  HGAP+DE RHAGDLGN+ A A+GVA   + D+QI L GPN+++GRA VVH   DDLGK G
Sbjct:    8 LGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.791e-37
Identity = 74/122 (60.66%), Postives = 85/122 (69.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V+G +  TQE  G TTV   V+GL PG HGFH+H  GDTTNGC+STG HFNP   THGAP+D  RHAGDLGNI    +G A  TI D+QI LDGPN++VGRA VVH   DDLGK G
Sbjct:    8 LNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37
Identity = 72/122 (59.02%), Postives = 85/122 (69.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G +  TQE  GPTTV   + GL PG HGFH+H  GDTTNGC+STGAHFNPNN  HGAP+DE RHAGDLGN+    +G    +I D+QI L GPN+++GRA VVH   DDLGK G
Sbjct:    8 LGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGG 129          
The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODCP_PINSY1.668e-5180.17Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC_PAUKA1.240e-3860.66Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_PANGI1.620e-3859.84Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC_SPIOL6.154e-3859.84Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PINSY8.038e-3859.02Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC1_MESCR8.038e-3860.66Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_BRUPA1.050e-3760.34Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC4_MAIZE1.371e-3759.02Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC1_BRAJU1.791e-3760.66Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_SOYBN3.054e-3759.02Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]

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Properties
Property NameValue
Genbank descriptionC32011E01EF RVDevelop1 Citrus clementina cDNA clone C32011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bp
ACACCAGAAACACAAAATCGCATTATCAATTAACATCATCCACCCGCTCA
CCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCTCCT
CGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGCCAA
ATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCCTCG
CTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAA
CTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTG
CCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGA
GTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGTTCG
TGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAATATG
GTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAAT
AACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGACCT
GGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGTGG
ACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCTTT
GTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGTGGGCATGACTTAGTC
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