FC920666

Overview
NameFC920666
Unique NameFC920666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920666_ssr177 microsatellite FC920666_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:70..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.054e-37
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKGT  V G V   Q   GP T+   +TGLTPG HGFH+H +GD TNGCIS G H+NP +  HG P DE RH GDLGN+ AN NGVAE  I D Q+ L G  +++GR  VVHE EDDLGK G
Sbjct:    7 LKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGG 128          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.210e-37
Identity = 71/122 (58.20%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V+G +  TQE  GPT V   V+GL PG HGFH+H  GDTTNGC+STG H+NP +  HGAP+DE RHAGDLGN+ A A+GVA   + D+QI L GPN+++GRA VVH   DDLGK G
Sbjct:    8 LGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 70/122 (57.38%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G +  TQ+   PTTVN  ++GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DEVRHAGDLGNI    +G A  TI D QI L GP +++GRA VVH   DDLGK G
Sbjct:    8 LNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = 3
Query:  342 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            V+G +   QE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DE RHAGDLGN+ A  +GVA   +VD+QI L GPN+++GRA VVH   DDLGK G
Sbjct:   14 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.161e-36
Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = 3
Query:  342 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            V+G +   QE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DE RHAGDLGN+ A  +GVA   +VD+QI L GPN+++GRA VVH   DDLGK G
Sbjct:   14 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 71/122 (58.20%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  ++ V G +  +QE  GPTTV   + GL PG HGFH+H  GDTTNGCISTG HFNPN   HGAP+DE RHAGDLGNI    +G    TI DN I L G N+++GRA VVH   DDLGK G
Sbjct:    8 LSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V+G +  T E  G TTV   V+GL PG HGFH+H  GD TNGC+STG HFNP+  THGAP+D  RHAGDLGNI+   +G A  TI D+QI L GPN++VGRA VVH   DDLGK G
Sbjct:    8 LNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.760e-36
Identity = 69/123 (56.10%), Postives = 87/123 (70.73%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            + GT+ V+GVV  TQE D GP  V+   +GL  G HGFH+HE+GDTTNGC S GAHFNP    HGAP+D +RH GDLGN+VA A+G A     D  ISL+G ++++GR  V+HE EDDLG+ G
Sbjct:    7 MTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKGT  V G V   QE +  P  V   +TGLTPG HGFH+H +GD TNGCIS G HFNP++ THG P D VRH GDLGN+ A+A+GVA+  I D  ++L G ++++GR  V+HE EDDLGK G
Sbjct:    9 LKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 73/122 (59.84%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G +  TQE  G TTV+  V+GL PG HGFH+H  GDTTNGC+STG HFNP+  THGAP+D  RHAGDLGNI    +G A  TI D QI L GPN++VGRA VVH   DDLGK G
Sbjct:    8 LNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGG 129          
The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_PRIGL3.054e-3758.20Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC5_MAIZE5.210e-3758.20Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC2_SOLLC1.161e-3657.38Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC1_ORYSJ1.161e-3660.34Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI1.161e-3660.34Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_PEA1.516e-3658.20Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_BRAOC4.411e-3658.20Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_SCHMA5.760e-3656.10Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC_DANRE7.523e-3656.10Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_ARATH7.523e-3659.84Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011E01EF RVDevelop1 Citrus clementina cDNA clone C32011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bp
ACACCAGAAACACAAAATCGCATTATCAATTAACATCATCCACCCGCTCA
CCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCTCCT
CGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGCCAA
ATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCCTCG
CTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAA
CTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTG
CCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGA
GTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGTTCG
TGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAATATG
GTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAAT
AACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGACCT
GGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGTGG
ACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCTTT
GTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGTGGGCATGACTTAGTC
back to top