FC920666

Overview
NameFC920666
Unique NameFC920666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 69/122 (56.56%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V+G +  TQE  GPTTV   ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+DE RHAGDLGN+    +G     IVD+QI L G N+++GRA VVH   DDLGK G
Sbjct:    8 LGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36
Identity = 66/116 (56.90%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  342 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            V+G++   Q+  GP T++  +TGLT G HGFH+HE+GD TNGC S GAHFNP    HG P+D  RH GDLGN++AN  GVAE  I D+ ISL G  +++GR  VVHE EDDLGK G
Sbjct:   28 VKGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHEKEDDLGKGG 143          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36
Identity = 70/122 (57.38%), Postives = 86/122 (70.49%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V+G +  +QE  GPT+V   V+GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+DE RHAGDLGNI A A+GVA   + D+QI L G ++++GRA VVH   DDLGK G
Sbjct:    8 LASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            + G +NV+G +   Q+  G T V  R+TGLTPG HGFH+H  GDTTNGC STG HFNP    HGAP D  RHAGDLGN+VA A+GVAE ++ D QI L G ++++GRA VVH  +DDLG+ G
Sbjct:   10 INGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHADQDDLGRTG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.283e-35
Identity = 71/122 (58.20%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L GT +V+G +  +QE  GPTTV   ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+DE RHAGDLGN+ A  +GV    I D+QI L GP++++GRA VVH   DDLGK G
Sbjct:    8 LAGT-DVKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGG 128          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35
Identity = 69/122 (56.56%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G +  TQ+   PTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DEVRHAGDLGNI    +G A  T+ D QI L GP +++GRA VVH   DDLGK G
Sbjct:    8 LSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35
Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G +  TQ   GPTTV   ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+D++RHAGDLGN+    +G    +I+D+QI L GPN++VGRA VVH   DDLGK G
Sbjct:    8 LSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.189e-35
Identity = 67/122 (54.92%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG   V+G++   Q+  GP  V  R+TGL  G HGFH+HE+GD T GC S G HFNP +  HG P+DE RH GDLGN+ A A+GVA  +I D+ ISL G N+++GR  VVHE  DDLGK G
Sbjct:    9 LKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHEKPDDLGKGG 130          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.189e-35
Identity = 70/122 (57.38%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G    TQ    PTTVN  ++GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DEVRHAGDLGNI    +G A  TI D QI L GP +++GRA VVH   DDLGK G
Sbjct:    8 LNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 67/115 (58.26%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  339 NVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            N+ G +   Q+D   TT++  + GLTPG HGFH+H+YGDTTNGCIS G HFNP N THG P DE+RH GDLGNIVA A+G A   I D  + L GPN+++GR+ VVH  +DDLGK
Sbjct:   58 NINGTIHF-QQDKNSTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGK 171          
The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_ANACO7.523e-3656.56Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC_CARCR9.826e-3656.90Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]
SODC2_ORYSJ9.826e-3657.38Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC2_MESCR9.826e-3657.38Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODC2_MAIZE1.283e-3558.20Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_NICPL1.676e-3556.56Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC_CARPA1.676e-3555.74Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_CAVPO2.189e-3554.92Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]
SODC1_SOLLC2.189e-3557.38Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODE_BRUPA2.859e-3558.26Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]

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Properties
Property NameValue
Genbank descriptionC32011E01EF RVDevelop1 Citrus clementina cDNA clone C32011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bp
ACACCAGAAACACAAAATCGCATTATCAATTAACATCATCCACCCGCTCA
CCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCTCCT
CGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGCCAA
ATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCCTCG
CTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAA
CTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTG
CCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGA
GTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGTTCG
TGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAATATG
GTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAAT
AACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGACCT
GGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGTGG
ACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCTTT
GTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGTGGGCATGACTTAGTC
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