FC920666

Overview
NameFC920666
Unique NameFC920666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920666_ssr177 microsatellite FC920666_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:70..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.876e-35
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  342 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            V G++   Q+ +G PTTV   V GLTPG HGFH+H+YGDTTNGCIS G HFNP N THG   DE+RH GDLGNI A A+G A  +I D  I L GPN+++GR+ VVH  +DDLGK
Sbjct:   14 VSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGK 128          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.876e-35
Identity = 71/122 (58.20%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G +  +QE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP D+ RHAGDLGNI    +G A  TI D QI L G N+V+GRA VVH   DDLGK G
Sbjct:    8 LSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 69/123 (56.10%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G +  +QE +G PTTV   ++GL PGPHGFH+H  GDTTNGC+STG H+NP+   HGAP DE RHAGDLGN+    +G A+ TIVD QI L G  +++GRA VVH   DDLGK G
Sbjct:    8 LSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGG 130          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 69/122 (56.56%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L G+  V+G V   QE  GPTT+   ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+D  RHAGDLGN+    +G    T+ D+QI L G N+VVGRA VVH   DDLGK G
Sbjct:    8 LTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG S V+G++   Q E  GP  V  R+TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA+ +I D+ ISL G ++++GR  VVHE  DDLGK G
Sbjct:    9 LKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = 3
Query:  339 NVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            +V+G +   Q+  G  TV   V+GL PG HGFH+HEYGD TNGC S+G HFNP    HGAP+D++RH GDLGNI A+++GVA   I D  ISL G ++++GRA VVH  EDDLGK G
Sbjct:   12 SVKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGG 128          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            +KG + VEGV+   Q+  GP  V  ++TGL+ G HGFH+HE+GD TNGC S GAHFNP    HG PKD  RH GDLGN+ A   GVAE  I D+ ISL GP+ ++GR  VVH   DDLG+ G
Sbjct:   10 MKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHVGDLGNVTAK-GGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGG 130          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 4.128e-34
Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L G+ +V+GVV   Q+D G  +V  ++ GLT G HGFH+H +GD TNGC+S G+HFNP N  HGAP D  RH GDLGN+ A   GVA+  I D+ ISL GPN+++GR  VVHE  DDLGK G
Sbjct:    8 LAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTAE-GGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGKGG 128          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.392e-34
Identity = 67/122 (54.92%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L G+ +V+GVV   Q+D G  TV  ++ GLT G HGFH+H +GD TNGC+S G HFNP N  HG+PKD  RH GDLGN+ A   GVA+    D QISL G  +++GR  VVHE +DDLGK G
Sbjct:    8 LAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHVGDLGNVTAE-GGVAQFKFTDPQISLKGERSIIGRTAVVHEKQDDLGKGG 128          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 67/122 (54.92%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V G +  +Q+   PTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DE RHAGDLGNI    +G A  TI D QI L GP +++GR  VVH   DDLGK G
Sbjct:    8 LSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGG 129          
The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_ONCVO4.876e-3560.00Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_IPOBA4.876e-3558.20Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_SOLCS1.086e-3456.10Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_ZANAE1.419e-3456.56Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_HYLLA1.419e-3455.28Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_HALRO3.161e-3456.41Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODC_CHICK3.161e-3454.92Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC2_XENLA4.128e-3455.74Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC1_XENLA5.392e-3454.92Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC_CAPAN7.042e-3454.92Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]

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Properties
Property NameValue
Genbank descriptionC32011E01EF RVDevelop1 Citrus clementina cDNA clone C32011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bp
ACACCAGAAACACAAAATCGCATTATCAATTAACATCATCCACCCGCTCA
CCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCTCCT
CGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGCCAA
ATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCCTCG
CTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAA
CTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTG
CCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGA
GTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGTTCG
TGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAATATG
GTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAAT
AACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGACCT
GGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGTGG
ACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCTTT
GTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGTGGGCATGACTTAGTC
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