FC920666
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3) HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33 Identity = 67/122 (54.92%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689 LKG VE + Q+ GP V R+TGLT G H FH+H++GD GC S G HFNP + HG PKDE RH GDLGN+ A +NGVA+ I D+ ISL G +V+GR VVHE EDDLGK G Sbjct: 9 LKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGG 130
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33 Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 3 Query: 324 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689 LKG V+GV+ Q+ G P V+ ++TGLT G HGFH+H+YGD T GC + G HFNP++ HG P DE RH GDLGN+ A +GVA +I D ISL G ++++GR VVHE +DDLGK G Sbjct: 9 LKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGG 131
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 2.676e-33 Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 3 Query: 324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689 LKG V GV+ Q+ +GGP + + GLT G HGFH+HE+GD T GC + GAHFNP + HG PKDE RH GDLGN+ A+ NG A+ + D+ ISL G ++++GR VVHE +DDLGK G Sbjct: 9 LKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGG 131
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.676e-33 Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = 3 Query: 324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683 L+G V G V +Q+ + P + + GLTPG HGFH+H+YGD+TNGC S G HFNP N THG PKD+VRH GDLGN+ A A+GVA I D+ + + G +TVVGR+ VVH DDLGK Sbjct: 9 LRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGK 129
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33 Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 3 Query: 324 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689 LKG V+G + Q+ G P ++ ++TGLT G HGFH+H+YGD T GC S G HFNP++ HG P DE RH GDLGN+ A +GVA +I D ISL G ++++GR VVHE +DDLGK G Sbjct: 9 LKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGG 131
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3) HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33 Identity = 69/122 (56.56%), Postives = 81/122 (66.39%), Query Frame = 3 Query: 324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689 L + V+G + QE G TTV V+GL PG HGFH+H GDTTNG +STG HFNP+ HGAP+D RHAGDLGNI+ +G A TI D QI L GPN++VGRA VVH D LGK G Sbjct: 8 LNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGG 129
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33 Identity = 71/123 (57.72%), Postives = 82/123 (66.67%), Query Frame = 3 Query: 324 LKGTSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689 +KG V GVV TQE+ P TVN +TGL G HGFH+H +GDTTNGC+S G HFNP HGAP DE RH GDLGNIVA+ + TI D ISL G +T+VGR VVH +DDLGK G Sbjct: 9 IKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGG 130
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33 Identity = 63/115 (54.78%), Postives = 82/115 (71.30%), Query Frame = 3 Query: 342 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683 V G + +TQ+ + + + GLTPG HGFH+H+YGD+TNGCIS G HFNP THG PK E+RH GDLGN+ A A+GVA+ + D ++L GPNTVVGR+ VVH +DDLG+ Sbjct: 36 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGE 150
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32 Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 3 Query: 324 LKGTSNVEGVVTLTQEDGGP-TTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683 L+G + V G++ Q GG TT++ V+GLTPG HGFH+H+YGD TNGC S G H+NP THG P D ++H GDLGNIVA ANGVAE I I L GP +V+G + VVH DDLG+ Sbjct: 51 LRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQ 171
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3) HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32 Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 3 Query: 324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689 LKG S V+G + Q E GP V +TGLT G HGFH+H++GD T GC S G HFNP + HG PKDE RH GDLGN+ A +GVA+ + D+ ISL G ++++GR VVHE DDLGK G Sbjct: 9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGG 131 The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 141
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bpback to top |