FC920666

Overview
NameFC920666
Unique NameFC920666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920666_ssr177 microsatellite FC920666_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:70..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 67/122 (54.92%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG   VE  +   Q+  GP  V  R+TGLT G H FH+H++GD   GC S G HFNP +  HG PKDE RH GDLGN+ A +NGVA+  I D+ ISL G  +V+GR  VVHE EDDLGK G
Sbjct:    9 LKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGG 130          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG   V+GV+   Q+  G P  V+ ++TGLT G HGFH+H+YGD T GC + G HFNP++  HG P DE RH GDLGN+ A  +GVA  +I D  ISL G ++++GR  VVHE +DDLGK G
Sbjct:    9 LKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG   V GV+   Q+ +GGP  +   + GLT G HGFH+HE+GD T GC + GAHFNP +  HG PKDE RH GDLGN+ A+ NG A+  + D+ ISL G ++++GR  VVHE +DDLGK G
Sbjct:    9 LKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            L+G   V G V  +Q+ +  P  +   + GLTPG HGFH+H+YGD+TNGC S G HFNP N THG PKD+VRH GDLGN+ A A+GVA   I D+ + + G +TVVGR+ VVH   DDLGK
Sbjct:    9 LRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVHAGTDDLGK 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG   V+G +   Q+  G P  ++ ++TGLT G HGFH+H+YGD T GC S G HFNP++  HG P DE RH GDLGN+ A  +GVA  +I D  ISL G ++++GR  VVHE +DDLGK G
Sbjct:    9 LKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 69/122 (56.56%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L  +  V+G +   QE  G TTV   V+GL PG HGFH+H  GDTTNG +STG HFNP+   HGAP+D  RHAGDLGNI+   +G A  TI D QI L GPN++VGRA VVH   D LGK G
Sbjct:    8 LNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 71/123 (57.72%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            +KG   V GVV  TQE+   P TVN  +TGL  G HGFH+H +GDTTNGC+S G HFNP    HGAP DE RH GDLGNIVA+     + TI D  ISL G +T+VGR  VVH  +DDLGK G
Sbjct:    9 IKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGG 130          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 63/115 (54.78%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  342 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            V G + +TQ+ +     +   + GLTPG HGFH+H+YGD+TNGCIS G HFNP   THG PK E+RH GDLGN+ A A+GVA+  + D  ++L GPNTVVGR+ VVH  +DDLG+
Sbjct:   36 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGE 150          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGP-TTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            L+G + V G++   Q  GG  TT++  V+GLTPG HGFH+H+YGD TNGC S G H+NP   THG P D ++H GDLGNIVA ANGVAE  I    I L GP +V+G + VVH   DDLG+
Sbjct:   51 LRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVHANTDDLGQ 171          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG S V+G +   Q E  GP  V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE  DDLGK G
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGG 131          
The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_RABIT1.569e-3354.92Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_RAT2.049e-3352.85Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_HORSE2.676e-3352.85Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_HAECO2.676e-3354.55Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]
SODC_MOUSE5.961e-3352.03Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC2_BRAJU5.961e-3356.56Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC1_DICDI5.961e-3357.72Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC_CAEEL7.785e-3354.78Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODE_ONCVO1.017e-3254.55Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_MACMU1.017e-3253.66Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32011E01EF RVDevelop1 Citrus clementina cDNA clone C32011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bp
ACACCAGAAACACAAAATCGCATTATCAATTAACATCATCCACCCGCTCA
CCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCTCCT
CGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGCCAA
ATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCCTCG
CTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAA
CTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTG
CCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGA
GTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGTTCG
TGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAATATG
GTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAAT
AACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGACCT
GGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGTGG
ACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCTTT
GTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGTGGGCATGACTTAGTC
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