FC920666

Overview
NameFC920666
Unique NameFC920666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920666_ssr177 microsatellite FC920666_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:70..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG S V+G +   Q E  GP  V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE  DDLGK G
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_MACFA (Superoxide dismutase [Cu-Zn] OS=Macaca fascicularis GN=SOD1 PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG S V+G +   Q E  GP  V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE  DDLGK G
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKADDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG   V+G++   Q E  GP  V   + GLT G HGFH+HE+GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA+ +I D+ ISL G + ++GR  VVHE  DDLGK G
Sbjct:    9 LKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG   V+G++   Q E  GP  V   + GLT G HGFH+HE+GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA+ +I D+ ISL G + ++GR  VVHE  DDLGK G
Sbjct:    9 LKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 68/124 (54.84%), Postives = 84/124 (67.74%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L+G++ V GVVTL Q  +  PTT+   + G  P    GFH+HE+GD TNGC+S G HFNP   THGAP+DE RH GDLGNI  +A GVA+  I D+ + L GP +VVGR+ VVH   DDLGK G
Sbjct:    8 LRGSAGVSGVVTLEQASEQDPTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA+  IVD+ ISL G ++++GR  VVHE  DDLG+ G
Sbjct:    9 LKGDGPVQGTIRF-EAKGHTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 62/120 (51.67%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            LKG   VEG +   Q+  GP  V+  +TGLT G HGFH+H++ D T GC S G HFNP +  HG PKD+ RH GDLGN+ A  +GVA  +I D+ I+L G  +++GR  VVHE  DDLGK
Sbjct:    9 LKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGK 128          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CAEBR (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis briggsae GN=sod-1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 62/115 (53.91%), Postives = 79/115 (68.70%), Query Frame = 3
Query:  342 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            V G + +TQ  +  P  +   + GLTPG HGFH+H+YGD+TNGC+S G HFNP   THG P  E RH GDLGN+ A A+GVA+  I D  I+L G NTV+GR+ VVH  +DDLG+
Sbjct:   36 VSGTIWITQNSESDPAVIEGEIKGLTPGLHGFHVHQYGDSTNGCLSAGPHFNPFGKTHGGPNSETRHVGDLGNVEAGADGVAKVHITDKLITLYGANTVIGRSMVVHAGQDDLGQ 150          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG + V GVV   QE D   TT++  +TG  P   HGFH+HE+GD TNGC S+G+HFNP   THG+P+DE RH GD+GN++A+ANGVA  +  D  I + GP +++GR  VVH  +DDLG+ G
Sbjct:    8 LKGDAGVSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 65/122 (53.28%), Postives = 83/122 (68.03%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            LKG + V GVV   Q  +  PTTV+  + G +P    GFH+HE+GD TNGC+S G HFNP   THGAP DEVRH GD+GN+  + NGVA+ +  D+ I L GP +VVGR+ V+H  +DDLGK
Sbjct:    8 LKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGK 129          
The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_MACFU1.017e-3253.66Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]
SODC_MACFA1.017e-3253.66Superoxide dismutase [Cu-Zn] OS=Macaca fasciculari... [more]
SODC_PANTR1.734e-3253.66Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN1.734e-3253.66Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_CANGA2.265e-3254.84Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_CEREL5.046e-3252.46Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_CANFA6.591e-3251.67Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_CAEBR6.591e-3253.91Superoxide dismutase [Cu-Zn] OS=Caenorhabditis bri... [more]
SODC_ASHGO8.608e-3252.42Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_YEAST1.124e-3153.28Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionC32011E01EF RVDevelop1 Citrus clementina cDNA clone C32011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bp
ACACCAGAAACACAAAATCGCATTATCAATTAACATCATCCACCCGCTCA
CCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCTCCT
CGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGCCAA
ATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCCTCG
CTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAA
CTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTG
CCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGA
GTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGTTCG
TGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAATATG
GTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAAT
AACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGACCT
GGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGTGG
ACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCTTT
GTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGTGGGCATGACTTAGTC
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