FC920666

Overview
NameFC920666
Unique NameFC920666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920666_ssr177 microsatellite FC920666_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:70..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L+G + V G VT  QE +  PTT+   +TG  P    GFH+H +GD TNGC S G HFNP+  THGAP D  RH GDLGN+  +A G A+ +I D+Q+ L GP++V+GR  VVH   DDLGK G
Sbjct:    8 LRGDAKVGGTVTFEQESESAPTTITYDLTGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 64/118 (54.24%), Postives = 78/118 (66.10%), Query Frame = 3
Query:  339 NVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            + +G V   QE +G P  V   VTGL  G HGFH+HE+GD TNGC+S+G HFNP    HGAP DE RH GDLGNI+AN +G     I D +I+L G N+++GR  VVH   DDLGK G
Sbjct:   12 DAKGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.769e-30
Identity = 61/121 (50.41%), Postives = 83/121 (68.60%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            +KG   V+G++   Q D   P  ++  ++GL  G HGFH+HE+GDTTNGC+S GAHFNP    HG+P DE RH GDLGNI +N +  +   I DN I+L G N+++GR+ VVH+ EDDLG+
Sbjct:    7 IKG-DGVDGIINFKQNDNKSPVIISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGR 126          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.723e-30
Identity = 65/119 (54.62%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  339 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVA-NANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            +V G V   Q+D   P  V+  V GLT G HGFH+HE+GD TNGC S GAHFNP    HG P   VRH GDLGNI A   +GV + +I D+QISL GPN+++GR  VVH   DDLG  G
Sbjct:   12 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGG 130          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 64/115 (55.65%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  342 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            VEG VTL+QE +G P  +N  V+GLTPG HG H+HE+GDT+NGCIS G H+NP +  HG+P D  RH GDLGNI A +NGVA  +I D  +SL G  +V+GR  V+H   DD G+
Sbjct:   13 VEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGR 127          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 64/118 (54.24%), Postives = 78/118 (66.10%), Query Frame = 3
Query:  339 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            + +G V   QED   P  V   +TGL  G HGFH+HE+GD TNGC+S+G HFNP N  HGAP DE RH GDLGNI A  +G  +  I D++I+L G N++VGR  VVH   DDLGK G
Sbjct:   12 DAKGTVYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 63/124 (50.81%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L+G + V G VT  QE +  PTT+   +TG  P    GFH+H +GD TNGC S G HFNP+  THGAP D  RH GDLGNI  +  G A+ ++ D+ + L GP++VVGR  VVH   DDLGK G
Sbjct:    8 LRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 63/124 (50.81%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            ++G SNV+G V   QE +  PTT+   ++G  P    GFH+H +GD TNGC S G HFNP+  THG    EVRH GDLGNI  +A G A+ T+ DN + L GP +V+GR  VVH   DDLGK G
Sbjct:    8 VRGDSNVKGTVIFEQESESAPTTITYDISGNDPNAKRGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVHAGTDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L+G S V G VT  Q+ + GP TV   + G  P    GFH+HE+GD TNGC S G HFNP    HG P D  RH GDLGN+  ++ GVA+  + D+ + L G N++VGR  V+H  EDDLGK G
Sbjct:    8 LRGDSKVSGTVTFEQDSESGPVTVTYDIKGNDPNAERGFHVHEFGDNTNGCTSAGPHFNPFKKNHGGPTDSERHVGDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 61/122 (50.00%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            ++G S + G VT  Q E+  PTT+   +TG       G H+H++GD TNGC S G HFNP+  THGAP DEVRH GDLGN   +A G A  ++ D+ I L GP +V+GR  VVH   DDLGK
Sbjct:    8 VRGDSKISGTVTFEQSEENSPTTITWNITGNDANAERGMHVHQFGDNTNGCTSAGPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVHSGTDDLGK 129          
The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC_PAETN2.120e-3051.61Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_DROVI2.120e-3054.24Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC5_DICDI2.769e-3050.41Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODC_BOMMO4.723e-3054.62Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC6_DICDI6.169e-3055.65Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]
SODC_CHYAM1.052e-2954.24Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_CORMI1.795e-2950.81Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_NEUCR2.344e-2950.81Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_YARLI6.820e-2949.19Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]
SODC_BOTFU8.908e-2950.00Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]

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Properties
Property NameValue
Genbank descriptionC32011E01EF RVDevelop1 Citrus clementina cDNA clone C32011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bp
ACACCAGAAACACAAAATCGCATTATCAATTAACATCATCCACCCGCTCA
CCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCTCCT
CGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGCCAA
ATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCCTCG
CTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAA
CTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTG
CCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGA
GTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGTTCG
TGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAATATG
GTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAAT
AACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGACCT
GGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGTGG
ACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCTTT
GTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGTGGGCATGACTTAGTC
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