FC920666

Overview
NameFC920666
Unique NameFC920666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920666_ssr177 microsatellite FC920666_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:70..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 3
Query:  342 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVA-NANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            V G +  +QE +G P  VN  ++GL+ G HGFH+HE+GDT+NGC+S GAHFNP ++ HG P   +RH GDLGNI +  ++ VA   I DN ISL G  +++GR  VVHE +DDLG  G
Sbjct:   13 VNGTIIFSQENEGSPVYVNGTISGLSGGLHGFHIHEFGDTSNGCLSAGAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLGG 130          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG   V+G +    +      V   + GL  G HGFH+H++GD T GC S G HFNP +  HG PKD+ RH GDLGN+ A  +GVA   I D+ I+L G ++++GR  VVHE  DDLG+ G
Sbjct:    9 LKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGG 130          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 62/124 (50.00%), Postives = 80/124 (64.52%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            LKG S+V G+V   QE +   T ++  +TG       GFH+H +GD TNGC S G HFNP N  HGAP+DE RH GDLGNI  +A G+++ ++ D  I L GP ++VGR  VVH  +DDLGK G
Sbjct:    8 LKGDSSVSGIVRFEQESEDQQTKISWEITGNDANALRGFHIHTFGDNTNGCTSAGPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVHAGQDDLGKGG 131          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 62/118 (52.54%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  339 NVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            + +G V   QE +  P  V   VTGL  G HGFH+HE+GD TNGC+S+G HFNP    HGAP DE RH GDLGNI A  +G     I D +I+L G N+++GR  VVH   DDLGK G
Sbjct:    4 DAKGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGG 121          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.385e-28
Identity = 62/118 (52.54%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  339 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            +V+G V   Q+D   P  V   V GL  G HGFH+HE+GD TNGC S G HFNP   +HGAP D  RH GDLGNI A+ +G  +  I D  I+L G N++VGR  VVH   DDLGK G
Sbjct:   12 DVKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVHADPDDLGKGG 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.541e-28
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  333 TSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            +  V G++   Q +    TT+   + GLTPG HGFH+H+YG   NGC S  AH+NP   THG P + ++H GDL NI A A+GVA   I+ N I L GP +V+GR+ VVH   DDLGK
Sbjct:   48 SDTVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVHANPDDLGK 165          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.541e-28
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 3
Query:  426 HGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            HGFH+H  GDTTNGC+STG HFNP    HGAP+DE RHAGDLGNI A A+GVA   + D+QI L G ++++GRA VVH   DDLGK G
Sbjct:    8 HGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGG 95          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 60/118 (50.85%), Postives = 75/118 (63.56%), Query Frame = 3
Query:  339 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            + +G V   QE    P  V   V GL  G HGFH+HE+GD TNGC+S+G HFNP N  HGAP DE RH GDLGNI A  +     +I D++I+L G ++++GR  VVH   DDLGK G
Sbjct:   11 DAKGTVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHADADDLGKGG 128          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGK 683
            L+G + V G V   QE +  PTT+   +TG       GFH+H +GD TNGC S G HFNP+  THGAP DE RH GDLGN+  +  G A+ ++ D  + L GP++V+GR  V+H   DDLGK
Sbjct:    8 LRGDAKVGGTVVFEQESESAPTTITWDITGNDANAKRGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGK 129          
BLAST of FC920666 vs. ExPASy Swiss-Prot
Match: SODC_HUMLT (Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 60/124 (48.39%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  324 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKVG 689
            L+G S + G VT  Q  +  PTTV+  +TG  P    G H+H++GD TNGC S G H+NP   THGAP DEVRH GDLGNI  +A G A  ++ D  I + G  +++GR  VVH   DDLG+ G
Sbjct:    8 LRGDSKITGTVTFEQANESAPTTVSWNITGHDPNAERGMHIHQFGDNTNGCTSAGPHYNPFKKTHGAPTDEVRHVGDLGNIKTDAEGNAVGSVQDKLIKVIGAESILGRTIVVHAGTDDLGRGG 131          
The following BLAST results are available for this feature:
BLAST of FC920666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
SODC4_DICDI8.908e-2951.69Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]
SODC_PIG1.519e-2846.72Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC_KLULA1.519e-2850.00Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODC_DROBS1.984e-2852.54Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_CERCA3.385e-2852.54Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODE_DIRIM7.541e-2848.31Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
SODC_ASPJA7.541e-2863.64Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_DROPS9.848e-2850.85Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]
SODC_CLAPU9.848e-2847.54Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_HUMLT1.680e-2748.39Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011E01EF RVDevelop1 Citrus clementina cDNA clone C32011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920666 ID=FC920666; Name=FC920666; organism=Citrus clementina; type=EST; length=700bp
ACACCAGAAACACAAAATCGCATTATCAATTAACATCATCCACCCGCTCA
CCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCTCCT
CGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGCCAA
ATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCCTCG
CTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCTCAA
CTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTGCTG
CCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAAGGA
GTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGTTCG
TGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAATATG
GTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAAT
AACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGACCT
GGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGTGG
ACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCTTT
GTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGTGGGCATGACTTAGTC
back to top