FC920677

Overview
NameFC920677
Unique NameFC920677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_YERPN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=metE PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.664e-54
Identity = 100/157 (63.69%), Postives = 119/157 (75.80%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPP+I GD+SRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEVEDLEKAGI +IQIDE ALREGLPLR+++   YL WAV +F++     Q+ TQIHTHMCY  F  +   I
Sbjct:  501 LDGFVFTQNGWVQSYGSRCVKPPVIIGDISRPEAITVEWAKYAQSLTEKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVEDLEKAGIGIIQIDEPALREGLPLRRADWQAYLQWAVDAFKLNAAVAQNDTQIHTHMCYCEFNDIMDSI 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_YERPE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia pestis GN=metE PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.664e-54
Identity = 100/157 (63.69%), Postives = 119/157 (75.80%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPP+I GD+SRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEVEDLEKAGI +IQIDE ALREGLPLR+++   YL WAV +F++     Q+ TQIHTHMCY  F  +   I
Sbjct:  501 LDGFVFTQNGWVQSYGSRCVKPPVIIGDISRPEAITVEWAKYAQSLTEKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVEDLEKAGIGIIQIDEPALREGLPLRRADWQAYLQWAVDAFKLNAAVAQNDTQIHTHMCYCEFNDIMDSI 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_YERPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=metE PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.664e-54
Identity = 100/157 (63.69%), Postives = 119/157 (75.80%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPP+I GD+SRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEVEDLEKAGI +IQIDE ALREGLPLR+++   YL WAV +F++     Q+ TQIHTHMCY  F  +   I
Sbjct:  501 LDGFVFTQNGWVQSYGSRCVKPPVIIGDISRPEAITVEWAKYAQSLTEKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVEDLEKAGIGIIQIDEPALREGLPLRRADWQAYLQWAVDAFKLNAAVAQNDTQIHTHMCYCEFNDIMDSI 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_YERP3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=metE PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.664e-54
Identity = 100/157 (63.69%), Postives = 119/157 (75.80%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPP+I GD+SRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEVEDLEKAGI +IQIDE ALREGLPLR+++   YL WAV +F++     Q+ TQIHTHMCY  F  +   I
Sbjct:  501 LDGFVFTQNGWVQSYGSRCVKPPVIIGDISRPEAITVEWAKYAQSLTEKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVEDLEKAGIGIIQIDEPALREGLPLRRADWQAYLQWAVDAFKLNAAVAQNDTQIHTHMCYCEFNDIMDSI 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_PHOLL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=metE PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.664e-54
Identity = 100/157 (63.69%), Postives = 119/157 (75.80%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPP+I GDVSRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV+DL++AGI +IQIDE ALREGLPLR+ E   YLDWAV +F++     +D TQIHTHMCY  F  +   I
Sbjct:  501 LDGFVFTQNGWVQSYGSRCVKPPVIIGDVSRPEAITVEWAKYAQSLTEKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVDDLQEAGIGIIQIDEPALREGLPLRREEWQSYLDWAVEAFKLNAAIAKDDTQIHTHMCYCEFNDIMPSI 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_CAMJJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=metE PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.664e-54
Identity = 104/161 (64.60%), Postives = 124/161 (77.02%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSE-HAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L GF FT NGWVQSYG+RCVKPP+I+GDVSR K +T+ WS  AQS++ + +KGMLTGPVTILNWSF R D    E+  QIALAI+DEV DLE AGI +IQIDEAALRE LPLRKS+ H+ YLDWA+ +F + + GV+  TQIHTHMCYS F  +   ID M
Sbjct:  497 LKGFLFTQNGWVQSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPREDISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPAFNLVHSGVKAKTQIHTHMCYSEFGDILKEIDAM 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_YERE8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=metE PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.173e-54
Identity = 100/157 (63.69%), Postives = 119/157 (75.80%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHI 472
            L GF FT NGWVQSYGSRCVKPP+I GD+SRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEVEDLEKAGI +IQIDE ALREGLPLR+++   YL WAV +F++     Q+ TQIHTHMCY  F  +   I
Sbjct:  501 LDGFVFTQNGWVQSYGSRCVKPPVIIGDISRPEAITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVEDLEKAGIGIIQIDEPALREGLPLRRADWQAYLQWAVDAFKLNAAVAQNDTQIHTHMCYCEFNDIMDSI 657          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BLOPB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=metE PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.838e-54
Identity = 97/153 (63.40%), Postives = 122/153 (79.74%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTL 460
            L+GF FT NGWVQSYGSRCVKPP+I GD+SR K +T+ W S AQS+T +P+KG+LTGPVTI++WSF R D  R     Q+AL+I+DEV DLEK+GI +IQIDE ALREGLPL++S+   YL+WA++ FRIT   V+D TQIHTHMCYS F+ +
Sbjct:  504 LNGFIFTQNGWVQSYGSRCVKPPVIIGDISRSKPITIEWISYAQSLTNKPIKGILTGPVTIMSWSFPREDMQRKTIALQLALSIRDEVIDLEKSGIGIIQIDEPALREGLPLKRSDQKQYLEWAINVFRITVSSVKDDTQIHTHMCYSEFSDI 656          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BIFLI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=metE PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.838e-54
Identity = 105/161 (65.22%), Postives = 122/161 (75.78%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSE-HAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L+GF FT N WVQSYG+RCVKPPI++GDVSR   +TV WS+ AQS T   MKGMLTGPVTILNWS+ R D    E   Q+ALAI+DEV DLE AGI +IQIDEAALRE LPLRKS+ HA YLDWA+ +FR+ +  V+ TTQIHTHMCYS F  +   ID M
Sbjct:  508 LNGFLFTKNAWVQSYGTRCVKPPIVWGDVSRANPITVEWSAYAQSKTDHVMKGMLTGPVTILNWSWPREDITHEEQTKQLALAIRDEVLDLEAAGIKIIQIDEAALREKLPLRKSDWHAKYLDWAIPAFRLVHSAVKPTTQIHTHMCYSEFNDIIRDIDAM 668          
BLAST of FC920677 vs. ExPASy Swiss-Prot
Match: METE_BUCAI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metE PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.707e-54
Identity = 104/160 (65.00%), Postives = 119/160 (74.38%), Query Frame = 2
Query:    2 LSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFTTLSTHIDMM 481
            L GFAFT NGWVQSYGSRCVKPPII GD+SRPK MT+ WS  AQS+T +P+KGMLTGPVTIL WSF R D    +   QIALA+ DEV DLEK  I +IQIDE ALREGLPLRKS    YL WAV  FR++  GV++TTQIHTHMCY  F  +   I ++
Sbjct:  496 LDGFAFTDNGWVQSYGSRCVKPPIIIGDISRPKPMTIEWSKYAQSLTKKPVKGMLTGPVTILLWSFPREDVSLKKIATQIALALYDEVLDLEKEKIEIIQIDEPALREGLPLRKSSWHEYLSWAVDVFRLSASGVKNTTQIHTHMCYCEFNDIMDSIALL 655          
The following BLAST results are available for this feature:
BLAST of FC920677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
METE_YERPN1.664e-5463.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_YERPE1.664e-5463.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_YERPA1.664e-5463.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_YERP31.664e-5463.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PHOLL1.664e-5463.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAMJJ1.664e-5464.605-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_YERE82.173e-5463.695-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BLOPB2.838e-5463.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFLI2.838e-5465.225-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BUCAI3.707e-5465.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011F03EF RVDevelop1 Citrus clementina cDNA clone C32011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920677 ID=FC920677; Name=FC920677; organism=Citrus clementina; type=EST; length=489bp
ATTATCAGGTTTCGCCTTCACTGCCAATGGGTGGGTGCAATCCTATGGAT
CTCGCTGTGTGAAGCCACCCATCATCTATGGTGATGTGAGCCGTCCCAAG
GCTATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACAGCTCGCCC
AATGAAAGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTG
TTAGAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCC
ATCAAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCA
AATTGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGC
ATGCTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGT
GGCGTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTT
CACGACATTATCCACTCATATCGACATGATGCTGATGTG
back to top